KEGG   Serratia sp. AS12: SerAS12_2652
Entry
SerAS12_2652      CDS       T01502                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
srs  Serratia sp. AS12
Brite
KEGG Orthology (KO) [BR:srs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:srs03032]
    SerAS12_2652
   03400 DNA repair and recombination proteins [BR:srs03400]
    SerAS12_2652
Enzymes [BR:srs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     SerAS12_2652
DNA replication proteins [BR:srs03032]
 Prokaryotic type
  DNA Topoisomerases
   SerAS12_2652
DNA repair and recombination proteins [BR:srs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SerAS12_2652
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4
Other DBs
NCBI-ProteinID: AEF50723
Position
complement(2853728..2856325)
AA seq 865 aa
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSADSTEDKAKKKVK
KDEKTALVNRMGVDPYHGWKADYEILPGKEKVVAELKSLAENADHIYLATDLDREGEAIA
WHLREVIGGDEKRFSRVVFNEITKNAIQQAFKQPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEYWELHADLLAKNDTALQMEVTH
AHDKPFKPVNREQTHAALKLLEKARYTVLDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALNMVRGYIGDNFGDKYLPKAPNQYSSKEN
SQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLSVKAGDY
QLRAKGRTLRFDGWTKVMPALRKGDEDRTLPYVEVGSDLELQKLIPSQHFTKPPARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMEDGLDQVANNHAEWKAVLDEFFAEFSEQLETAEKDPEDGGMRPNQMVMTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPETEVLNILEGDDAETNALRARH
RCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRLKGYDGPVVECDKCGSEMHL
KMGRFGKYMGCTNETCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKDRLPEKLRYLADAPVADGEGNKTMVRFSRKTKQQYV
SSEKDGKATGWSAFYVDGKWVEGKK
NT seq 2598 nt   +upstreamnt  +downstreamnt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatac
ttaggtaatgactacgtggtgaagtccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagccagcaaaaagagcgctgactcaaccgaagacaaagccaagaagaaagttaaa
aaagatgagaaaacggcgctggtaaatcgaatgggcgtcgatccttaccatggctggaaa
gcggattatgaaattctgccaggtaaagaaaaagttgtcgcagagttaaaatcgttagcg
gaaaacgccgaccacatttatctcgcaacggaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtgatcggcggcgacgagaaacgctttagccgcgtggtgttcaac
gaaatcaccaagaacgcgatccaacaggcctttaaacagccgggtgagttgaatatcgat
cgtgttaacgcacaacaggcgcgtcgctttatggaccgcgtggtgggttacatggtatcg
ccgctgctgtggaaaaaaattgcccgcggcctgtccgctgggcgcgtgcaatctgttgcg
gtacggttggtggtggagcgcgaacgcgacatcaaagccttcgtaccggaagagtactgg
gagctgcacgccgatctgctggcgaagaatgatactgcgctgcagatggaagtgacgcat
gcccacgacaaaccgttcaaaccggttaaccgtgagcagacccacgccgccctcaaattg
ctggagaaagcccgttatacggtgctggatcgcgaagacaaacctaccagcagcaagccg
ggcgcgcctttcattacctcgacgctgcaacaggcggccagcacccgtctgagttttggc
gtgaagaaaaccatgatgatggctcagcggctgtatgaagccggtcacatcacctacatg
cgtactgactccaccaacctgagccaggatgcgctcaacatggtgcgtggctatatcggc
gacaatttcggcgacaagtacctgccgaaagcgccaaaccagtacagcagcaaagaaaac
tcgcaggaagcgcacgaagctatccgcccgtcggacgtgaacgtgctggccgagcagttg
aaagatatggaagcggatgcgcaaaagctgtatcagctgatctggcgccagttcgtggcc
tgtcagatgacgcctgcgcagtacgattccactacgctgtctgtgaaggccggtgattat
cagctgcgtgccaaaggccgtacgctgcgtttcgatggttggaccaaagtgatgcctgcc
ctgcgcaagggtgatgaagaccgcaccttgccgtatgttgaagtcggcagcgatctggaa
ctgcaaaagctgatcccgagccagcacttcaccaagccgcctgcgcgttacagcgaagcc
tcgttggtgaaagagctggaaaaacgcggtattggccgtccatcgacctatgcgtcgatc
atctcgaccattcaggaccgtggctatgtgcgggtcgaaagccgccgtttctacgccgag
aaaatgggtgagatcgttactgatcgtctggaagaaaacttccgtgagctgatgaactat
gactttacagcgcgcatggaagacggcctcgaccaggtagccaataaccacgccgagtgg
aaagcggtgctggatgagttttttgccgagttcagtgaacagttggaaacggcggagaaa
gatcctgaagacggcggtatgcgcccgaatcagatggtcatgaccagcatcgattgccca
acctgcggccgtaaaatgggcatccgtaccgccagtaccggcgtcttcctcggttgttcc
ggttatgcgctgccgccgaaggaacgctgcaaaaccaccattaacctggtgccggaaacg
gaagtgctgaacatcctcgaaggggacgatgcagaaaccaacgcgttgcgtgctcggcat
cgttgccagaaatgcggcacggcgatggacagctacctgatcgataaccagcgcaagctg
cacgtctgcggtaacaacccggcgtgtgacggctatgaaatcgaagagggcgaattccgc
ctgaaagggtatgacggcccggtagttgagtgcgacaaatgtggttccgaaatgcacctg
aaaatggggcgcttcggtaagtacatgggttgcaccaacgagacgtgcaaaaacacccgt
aaaatcctgcgtaacggcgatgttgcgccgccgaaggaagatccggttccgttaccggaa
ctgccatgcgaaaagtcagacgcttactttgttctgcgcgacggtgctgccggcgtgttc
ctggcggccaacaccttccctaaatcgcgcgaaactcgtgcgccgctggtagaagaactg
gcccgtttcaaggatcgtctgccggaaaaactgcgttacctggcggatgcgccggtagcg
gatggcgaaggcaacaaaacgatggtgcgcttcagccgtaaaaccaaacagcagtatgtc
tcttcagagaaagacggtaaggccacaggttggtccgctttctacgtggacggcaaatgg
gttgaaggcaaaaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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