KEGG T04246: TUE45

Streptomyces reticuli: TUE45_05832

Entry

TUE45_05832       CDS       T04246

Name

(GenBank) hypothetical protein

K03628

transcription termination factor Rho

Organism

srw Streptomyces reticuli

Pathway

srw03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:srw00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TUE45_05832
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:srw03021]
    TUE45_05832
   03019 Messenger RNA biogenesis [BR:srw03019]
    TUE45_05832
Transcription machinery [BR:srw03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     TUE45_05832
Messenger RNA biogenesis [BR:srw03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     TUE45_05832

SSDB

Motif

Pfam:

Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 NACHT AAA ResIII Spore_III_AA AAA_22

Other DBs

NCBI-ProteinID:

CUW31094

Position

I:6538957..6540933

AA seq 658 aa
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAAGGAPAAAKADTATETKPKRRATSKARTGEDAEKKAEKAGKAA
DSPAEKAVAQQQIEIPGQPASDDAPTERRRRRATADAGSPAASSAETVAAEAKSEAKAET
PAQQQPQQGEAKGDAGDGEGRGRRDRRERGRDRDRRNKGDEQQGGQQRQQQGQQQGGRQD
RQQDDDDFEGGRRGRRGRYRDRRGRRGRDEIAEPQLAEDDVLIPVAGILDILDNYAFIRT
SGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKEGERREKFNALVRLDSVNGMAPEH
GRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQRGLIVAPPKTGKTMIMQ
AIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIER
AKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIED
GGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDASGTRKEE
ILLGAEELGIVWKLRRVLHALDQQQAIELLLDKMKQTKSNVEFLMQIQKTTPAPGNGD

NT seq 1977 nt +upstreamnt +downstreamnt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagctgcagcaggtcgcctcgggcctcgggatcaggggcacc
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcccaggccgccggggga
gcccccgccgccgccaaggccgacaccgccaccgagaccaagccgaagcgccgggccacc
tccaaggcccgtaccggcgaggacgccgagaagaaggcggagaaggcggggaaggctgct
gactctcccgccgagaaggccgtggcccagcagcagatcgagatccccggccagcccgcc
tcggacgacgccccgaccgagcgccggcgccgccgcgccaccgccgacgcgggcagcccg
gccgcgagcagcgccgagaccgtcgccgccgaggccaagagcgaggccaaggccgagacg
cccgcgcagcagcagccgcagcagggcgaggccaagggcgacgccggtgacggcgagggc
cgtggccgccgggaccgccgcgagcgcggccgggaccgtgaccgccgtaacaagggcgac
gagcagcagggcggccagcagcgtcagcagcagggccagcagcagggcggccggcaggac
cgccagcaggacgacgacgacttcgagggcggccggcgcggccgtcgtggccgctaccgc
gaccgccggggccgtcgcggccgtgacgagatcgccgagccgcagctcgccgaggacgac
gtcctgatccccgtcgcgggcatcctggacatcctcgacaactacgccttcatccggacc
tccggctacctgccgggcccgaacgacgtgtacgtctccctcgcccaggtccgcaagaac
ggcctgcgcaagggtgaccacgtcaccggtgcggtccggcagccgaaggagggcgagcgc
cgcgagaagttcaacgcgctggtccgcctggactccgtcaacggcatggcgcccgaacac
ggccgcggccgcccggagttcaacaagctgaccccgctctacccgcaggaccggctccgt
ctggagaccgacccgggcgtgctcaccacccgcatcatcgacctggtctcgccgatcggt
aagggccagcgcggtctgatcgtggccccgccgaagaccggcaagaccatgatcatgcag
gcgatcgccaacgcgatcacgcacaacaaccccgagtgccacctgatggtcgtcctcgtc
gacgagcgtccggaagaggtcaccgacatgcagcggtcggtcaagggcgaggtcatctcc
tcgaccttcgaccgtccggccgaggaccacacgaccgtcgccgagctggccatcgagcgg
gccaagcgactggtcgagctgggccacgacgtggtcgtgctgctcgactcgatcacgcgt
ctgggccgcgcctacaacctggcggcgccggcctccggccgcatcctgtccggtggtgtc
gactcgaccgcgctctacccgccgaagcggttcttcggtgcggcgcggaacatcgaggac
ggcggctcgctgaccatcctggccacggcgctcgtggacaccgggtcccgcatggacgag
gtgatcttcgaggagttcaagggcaccggcaacatggagctgaagctcgaccggaagctc
gccgacaagcgcatcttcccggcggtggacgtggacgcgtccggtacccgtaaggaagag
atcctgctcggcgccgaggagctgggcatcgtctggaagctgcgccgggtgctgcacgcg
ctcgaccagcagcaggcgatcgagctgcttctcgacaagatgaagcagaccaagtcgaac
gtcgagttcctgatgcagatccagaagacgacgccggcgcccggcaacggcgactga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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