KEGG T04916: 107750262

Sinocyclocheilus rhinocerous: 107750262

Entry

107750262         CDS       T04916

Name

(RefSeq) twinfilin-2-like

K14962

COMPASS component SWD2

Organism

srx Sinocyclocheilus rhinocerous

Pathway

srx03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:srx00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107750262
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:srx03019]
    107750262
   03036 Chromosome and associated proteins [BR:srx03036]
    107750262
Messenger RNA biogenesis [BR:srx03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     107750262
Chromosome and associated proteins [BR:srx03036]
Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     107750262
    COMPASS/SET1 complex (yeast)
     107750262

SSDB

Motif

Pfam:

Cofilin_ADF WD40 ANAPC4_WD40 NBCH_WD40 DUF4881 PQQ_2 WD40_2 MinC_C

Other DBs

NCBI-GeneID:

107750262

NCBI-ProteinID:

XP_016421060

Position

Unknown

AA seq 617 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKG
VILEASFTPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASA
CSNMLVLGAYREPRQSWDKDYDHFLLPLLDPHEPCYILYRLDTKNAQGYEWLFISWSPDQ
SPVRQKMLYAATRATVKKEFGGGHVKDDMFGTVEEDVCLQGYLRHVTSCSAPAPLTAAEQ
ELQRIKITEVKTESTVDPKHQTLQGLAFPLQAEAKRALQQLAERRINYIQLKLDTEKETI
ELVHTSPTEIRDLPCRIPLDTPRYHFFLYKHSHEGDYFESVVFIYSMPGYSCSIKERMLY
SSCKSRLLEEVERDFHLEVAKKLEIDSGEELTGEYLYDEVHPKQHAHKQAFAKPRGPAGK
RGNKRLIKGGGENGGNS

NT seq 1854 nt +upstreamnt +downstreamnt
atgaagctcacagacaatgtgctgcggagtttcagggttgcgaaggttttccgagagaat
tcggacaaaatcaactgctttgacttcagttcgaacggcgaaactgtaatatcgagtagc
gatgacgactcgattgtcttgtacgactgccaggagggaaaacccaaacggacgctttac
agtaagaagtacggtgtggatctcatcagatacacccatgccgccaacactgttgtctac
agctccaacaagattgatgatactattcgatacctgtccctacatgacaataagtacatt
cgctactttcctggacacagtaagagggttgttgctctgtctatgtctcctgttgacgac
acattcatttctggctcccttgataaaactattcgcctgtgggaccttcgctcacctaac
tgtcagggcctcatgcacctgcaagggaagcctgtgtgctcatttgatcccgaggggttg
atttttgctgcgggagtgaattctgagatggtcaagctttacgatctacgctcctttgat
aagggtccattcgccacttttaaactacaatatgagcgaacctgtgagtggacaggtctc
aagttcagcaatgacggaaagctcattctggtctccaccaatggaggaacactcagagtg
ctggacgctttcaaaggagccgtgctccactcatttgggggctataacaacagtaaaggt
gtcattctggaggcctctttcacaccagactctcagttcatcatgatcggatcagaagat
ggcaagatccatgtgtggaatgctgagagtggaatgaaagtagcacttcttgatgggaag
cacactggtccagtcacctgtctacaatttaaccccaaattcatgacctttgccagtgcc
tgttctaacatgctggtgctgggggcatacagagagccacgtcagagctgggacaaagac
tatgaccacttcctgctccccctgctagaccctcacgagccctgctacattctatatcgg
ctggacaccaagaacgctcaaggctatgagtggctcttcatctcctggtcacctgaccag
tctcctgtccggcaaaagatgctgtacgctgccactcgggccacagttaagaaagagttt
ggtggtggacacgtcaaagatgacatgttcggcacagttgaggaggacgtttgtcttcag
gggtacctgcgacacgtgacttcatgttctgcaccagcacccctgacagcagctgaacag
gagctacagcgaatcaaaatcacagaggtgaaaactgagagcactgtggaccccaaacat
cagactctacagggtcttgccttcccattacaggctgaggccaaacgtgctctacagcag
ctcgcagagagacgcattaactacattcaactaaagctagatacagagaaggagacaatt
gaactcgtgcacaccagcccgacagaaatccgtgatctaccctgccggatcccccttgat
acacccagataccacttcttcctctacaaacattcacatgagggagactacttcgagtct
gtggtgttcatatactccatgccaggatacagctgtagcatcaaggaaaggatgctgtat
tccagctgtaagagtcgacttctggaagaagtagagagggacttccacctagaagtggct
aaaaagttggagatagatagtggagaggagctgacaggggagtatctgtatgatgaggtc
catcctaagcagcatgcccacaagcaagcattcgccaaacctcgtggccctgctgggaag
aggggaaacaaacgtctaatcaagggaggtggagagaacggtggcaacagctag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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