KEGG   Serratia rubidaea: AXX16_1043
Entry
AXX16_1043        CDS       T04417                                 
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
srz  Serratia rubidaea
Pathway
srz02020  Two-component system
srz02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:srz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AXX16_1043
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AXX16_1043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:srz03021]
    AXX16_1043
Transcription machinery [BR:srz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AXX16_1043
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: AML56765
Position
complement(1123632..1125065)
AA seq 477 aa
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDPHDEIDAQE
SADTEGLDTREALEQKDMPDELPLDATWDEIYTAGTPSGTGTDYRDDELPVYQGETTQTL
QDYLMWQVDLTPFSDTDAAIATSIVDAVDDTGYLTVSLEDILESVGDADVTLDEVEAVLK
RVQRFDPIGVAARDLRDCLLIQLSQYAKETPFLAEARLIISDHLDLLANHDFRSLMRSTR
LKEDTLKEAMLLIQSLDPRPGQSINTGESEYVIPDVLVRKVHNRWTVELNADSIPRLKIN
QHYAALGNSSRNEADGQFIRSNLQEAKWLIKSLESRNDTLLKVTRCIVEQQEAFFEQGEE
FMKPMVLADIAQAVEMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLIAAENPAKPLSDSKLATLLADQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgaagcaaggtttgcaactcaggctcagccaacaattggcgatgactccccagctgcag
caggcgatccgtctgctgcagctgtctacgcttgagcttcagcaagagatccaactggcg
ttagagagcaacccgctgcttgagcaaaccgacccgcacgacgagatcgacgcgcaagaa
agcgctgacaccgaaggtctggatacccgcgaagcgctggagcagaaggatatgccggac
gaactgccgctggacgccacctgggatgaaatctacaccgccggcacgccatcgggcacc
ggcaccgattaccgcgatgacgaactgccggtctaccagggggaaaccacccagacgctg
caggattacctgatgtggcaggtggatctgacgccgttttccgataccgatgccgccatc
gccacctcgatcgtcgacgccgtcgacgacaccggctatctcaccgtgtcgttggaagat
attctggaaagcgtcggcgacgcagacgtcacgctggatgaagtggaggcggtgctcaag
cgggtgcagcgtttcgacccgatcggcgtcgcggcgcgcgatctgcgcgactgtctgctg
atccagctgtcccaatacgccaaagaaacgcctttcctcgccgaagcccggctgatcatc
agcgaccatctggatctgctggccaaccacgactttcgcagcctgatgcgatcaacccgg
ctaaaagaagatacactgaaagaagcgatgctgctgattcagtcgctcgacccgcgcccg
gggcaatctatcaataccggcgagtcggaatatgtcattcccgacgtgctggtgcgcaag
gtgcacaaccgctggacggtcgagctgaatgccgacagcattccgcgtctgaagatcaac
cagcactatgccgcactgggcaacagctcgcgtaacgaagccgacggccagtttatccgc
agtaacctgcaggaagcgaaatggctgatcaaaagcctggaaagccgtaacgatacgctg
ttgaaggtgacgcgctgcatcgtcgagcagcaggaggcgttctttgaacaaggtgaagag
tttatgaagcccatggtgctggcggatatcgcccaggccgtggagatgcatgaatcgacg
atttcacgcgtgaccacgcagaaattcctgcacagcccgcgcggcatcttcgaactgaaa
tatttcttctccagccacgtcaacaccgacagcggcggcgaggcatcctccacggcgatc
cgcgcgctggtgaagaaattaatcgcggcggaaaaccccgccaaaccgcttagcgacagt
aaactggccaccctgcttgccgatcagggcatcatggtggcgcggcgcaccgtcgccaag
taccgagagtctttgtccatcccgccgtcgaaccagcgtaaacagttggtttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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