KEGG   Sus scrofa (pig): 100101926
Entry
100101926         CDS       T01009                                 
Symbol
EIF4A3
Name
(RefSeq) eukaryotic initiation factor 4A-III
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03013  Nucleocytoplasmic transport
ssc03015  mRNA surveillance pathway
ssc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100101926 (EIF4A3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100101926 (EIF4A3)
   03015 mRNA surveillance pathway
    100101926 (EIF4A3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100101926 (EIF4A3)
   03041 Spliceosome [BR:ssc03041]
    100101926 (EIF4A3)
   03009 Ribosome biogenesis [BR:ssc03009]
    100101926 (EIF4A3)
   03012 Translation factors [BR:ssc03012]
    100101926 (EIF4A3)
Enzymes [BR:ssc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100101926 (EIF4A3)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100101926 (EIF4A3)
   mRNA cycle factors
    Stress granule specific factors
     100101926 (EIF4A3)
Spliceosome [BR:ssc03041]
 Complex C
  Other components
   EJC/TREX
    100101926 (EIF4A3)
Ribosome biogenesis [BR:ssc03009]
 Eukaryotic type
  90S particles
   Helicases
    100101926 (EIF4A3)
Translation factors [BR:ssc03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    100101926 (EIF4A3)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_30 AAA_22 Flavi_DEAD
Other DBs
NCBI-GeneID: 100101926
NCBI-ProteinID: NP_001093663
Ensembl: ENSSSCG00000017155
UniProt: A6M931
Position
12:2285679..2311750
AA seq 411 aa
MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1236 nt   +upstreamnt  +downstreamnt
atggcggccacggccacgatggcgacctcaggctcggcgcggaagcggctgctgaaagag
gaagacatgaccaaagtggaattcgagaccagcgaggaggtggacgtgactcccacgttc
gacactatgggcctgcgggaggacctgctgcgcggcatctatgcctacggttttgaaaag
ccttcggcaatccagcagcgagctattaagcagatcatcaaggggagagatgtcattgca
caatctcagtctggtacaggcaaaacagctaccttcagtatttctgtcctgcagtgtttg
gatattcaggttcgtgaaacccaagctttgatcttggctccaacgagagagttagctgta
cagatccagaagggcctcctcgctctgggtgactacatgaacgtccagtgccatgcctgt
attgggggcaccaacgtcggggaggacatcaggaaactggactatggacagcacgttgtc
gccggcacacctgggcgagtctttgacatgattcgtcgcagaagtttgaggacacgtgcc
atcaagatgttggttttggatgaggctgatgaaatgttaaataaagggttcaaagagcag
atctacgacgtgtacaggtacttacccccggccacgcaggtggtgctcatcagcgccacg
ctgccccacgagatcttagagatgaccaacaagttcatgaccgaccccatccgcatcttg
gtgaaacgtgatgaactgactctggaaggcatcaagcagttctttgtggccgtggagaga
gaggagtggaagtttgacaccctgtgtgacctctatgacacactcaccatcactcaggcy
gtcatcttctgtaacaccaagaggaaggttgactggctgacggagaagatgagggaagcc
aacttcaccgtgtcatccatgcacggggacatgccccagaaggagcgcgagtccatcatg
aaggagttccgctcgggtgccagccgcgtgctcatttccacggacgtctgggcccggggg
ctggacgtgccccaggtgtccctcatcatcaactacgacctgcccaacaacagagagctg
tacatacacagaatcgggcgatcgggccgctacggccgaaagggcgtggccataaacttt
gtaaagaacgacgacatccghatcctcagagacattgagcagtactactccactcagatt
gacgagatgcccatgaacgttgctgatctgatctga

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (313)   
   KEGG ORTHOLOGY (1)   
   RefGene (308)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (338)   

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