KEGG   Sus scrofa (pig): 100125545
Entry
100125545         CDS       T01009                                 
Name
(RefSeq) TATA-box-binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03022  Basal transcription factors
ssc05016  Huntington disease
ssc05017  Spinocerebellar ataxia
ssc05165  Human papillomavirus infection
ssc05166  Human T-cell leukemia virus 1 infection
ssc05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100125545
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100125545
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    100125545
   05165 Human papillomavirus infection
    100125545
  09164 Neurodegenerative disease
   05016 Huntington disease
    100125545
   05017 Spinocerebellar ataxia
    100125545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    100125545
   03021 Transcription machinery [BR:ssc03021]
    100125545
Transcription factors [BR:ssc03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    100125545
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100125545
  RNA polymerase III system
    TFIIIB
     100125545
  RNA polymerase I system
    SL1/TIF-1B
     100125545
SSDB
Motif
Pfam: TBP DUF3378
Other DBs
NCBI-GeneID: 100125545
NCBI-ProteinID: XP_020941156
Position
1:18..3870
AA seq 82 aa
MVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKV
RAEIYEAFENIYPILKGFRKTT
NT seq 249 nt   +upstreamnt  +downstreamnt
atggtggggagctgtgatgtgaagttccctataaggttagaaggccttgtgcttacccac
caacagttcagtagttatgagccagagttgtttcctggtttaatctacagaatgatcaaa
ccgagaattgttctccttatttttgtctctggaaaagttgtattaacaggtgctaaagtc
agagcagaaatttacgaagcgtttgagaacatctaccctatcctaaagggtttcaggaag
acgacgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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