KEGG   Sus scrofa (pig): 100188906
Entry
100188906         CDS       T01009                                 
Symbol
CHD3
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 3 isoform X1
  KO
K11642  chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    100188906 (CHD3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ssc03036]
    100188906 (CHD3)
Chromosome and associated proteins [BR:ssc03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    100188906 (CHD3)
  Chromatin remodeling factors
   NuRD complex
    100188906 (CHD3)
SSDB
Motif
Pfam: SNF2-rel_dom CHDCT2 CHDII_SANT-like CHDNT Helicase_C PHD DUF1087 Chromo ResIII HDA2-3 HMG_box DEAD PHD_2 AAA_22
Other DBs
NCBI-GeneID: 100188906
NCBI-ProteinID: XP_020923494
Ensembl: ENSSSCG00000021363
Position
12:53135767..53163244
AA seq 2082 aa
MRWGDIWEEAAPASLTETSGEKARALALREADKDDIRLLPSALGVKKRKRGPKKQKENKP
GKPRKRKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGE
GDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPM
SKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPAL
PPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGK
RKKGGSYVLQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGC
PAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPH
CEKEGVQWEAKEEDDDYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHC
LNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDAPPPRPL
QGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDG
KSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQST
WEEDEMNIPEYEDHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY
ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG
HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK
KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY
KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP
HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIM
MDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIF
SQGCWKLSSSFFEAKRGEVEGGATCLLKEMTKMLDLLEDFLDYEGYKYERIDGGITGALR
QEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQ
ANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEE
LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVRE
EDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQE
DQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTR
QRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFA
DGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPT
KTSPTTPEASAANSPCTSKPATPAPSEKGEGMRTPLEKDEAENQEEKPEKNSKTGEKMEA
EADTPSPAPSLGERLEPRKVPLEDEGPGGPGEMEPEPGYRGDREKSATESTPGERGEEKP
LDGQEQRERPEGETGDLGKRAEDVKGDRELRPGPPRDELRSNGRREEKVEKPRFMFNIAD
GGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIIN
EPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARF
AEAECLAESHQHLSKESLAGNKPANAVLHKGKGRGGPARGRAHNAASEPAGGVAERHEGG
RDPPASHAVPNTPHRSPPSDVRAQHPQPAGQQGHGASPHTGLPPGSLRHTSGVRGGLQRR
TRRGPGRRRRQLQPDACRVLHHSRHQRPSSAGEEGEGNDGGVGVRRAGSEGAPSRGGDLY
RRLTGSQTCPSPRPRSRGRPPAQALGPAASPPPSPPLGPPLG
NT seq 6249 nt   +upstreamnt  +downstreamnt
atgaggtggggggacatctgggaagaagcagccccagcctctctgacagaaacatctgga
gagaaagccagggccctagccctgcgggaagcagataaagatgacattcggctgctgcct
tcagcattgggtgtgaagaagagaaaacgaggacccaagaagcagaaggagaacaagcca
gggaaaccccgaaaacgcaagaagcttgacagcgaggaggaatttggctctgagcgagat
gagtaccgggagaagtcggagagtggaggcagtgaatatggaaccggacccggtcggaaa
cggagaaggaagcaccgagaaaaaaaggagaaaaagacaaagcggcggaaaaaaggggag
ggagatggagggcaaaagcaggtggagcagaagtcgtcagcaaccctgcttctgacctgg
ggcctggaggacgtggagcatgtgttctccgaagaggactaccacactctcaccaactac
aaagccttcagccagttcatgaggcccctgattgctaagaagaatcctaagatcccaatg
tctaagatgatgaccatccttggggccaagtggagagagttcagcgccaacaaccccttc
aaggggtcagcagctgctgtggcagcagcagcagccgccgcagccgcagctgtagctgag
caggtgtcagctgccgtctcgtcagccaccccaatagcaccttccggaccccccgccctt
ccaccaccccctgctgctgatatccagcccccacccatccgaagagccaaaaccaaagag
ggcaaaggtccaggccataagaggcggagtaagagcccccgagtgcctgatggacgcaag
aagcttcggggaaagaagatggcaccactcaaaatcaaactaggcctgctgggcggcaag
aggaagaagggtggctcgtatgttttgcagagcgacgagggccccgaacccgaggctgag
gagtcagacctggacagcggcagtgtccacagtgcctcaggccggcccgatggccccgtc
cgcaccaagaaactaaagagaggccggccaggacggaagaagaagaaggtcctgggctgt
cccgcagtggccggggaggaggaggttgatggctacgagacggatcaccaggattactgt
gaggtgtgccagcagggtggggaaattattctgtgtgacacctgccctcgtgcctaccac
ctcgtctgccttgatcctgagcttgaccgggctcctgagggcaagtggagctgcccccac
tgtgagaaggagggcgttcagtgggaggcaaaggaggaggatgacgactacgaagaggag
ggagaggaggaaggggagaaggaggaggaggacgaccacatggagtactgccgcgtgtgc
aaggacggcggcgagctgctgtgctgcgatgcctgcatctcctcctaccacatccactgt
ctgaacccgcccctgcccgacatccccaacggtgaatggctgtgtccccgatgcacatgt
cctgtgctgaaaggccgtgtgcagaagatcctgcactggcggtggggggagccacccgtg
gcagtgccagccccccaacaggcagacgggaatccagatgccccacccccacgtcccctt
caaggcaggtcggagcgagagttctttgtcaagtgggtaggactgtcctactggcattgc
tcctgggccaaggagcttcagctggagatcttccacttggtcatgtaccggaactaccaa
cggaagaacgacatggatgagcccccgcccctggactatggctctggggaggatgacggg
aagagtgacaagcgcaaggtgaaggacccgcactacgccgagatggaggagaagtactat
cgctttggcatcaagcccgagtggatgaccgtccaccggatcatcaaccacagtgtggat
aaaaaggggaattaccactatctagtgaaatggagggacttgccctatgaccagtccaca
tgggaggaagatgaaatgaacatccctgaatatgaagaccacaagcaaagctactggaga
caccgagaactcattatgggggaggaccccgcccagccccgcaagtataagaagaagaag
aaggaactgcagggcgacgggcctcccagttctcccactaacgatcctacagtgaaatac
gagacacagccccggtttatcacagccaccggaggcacgctgcacatgtatcagctggaa
gggttgaactggctacgcttctcgtgggcccagggcacagacaccattctggctgatgag
atggggctgggcaagaccatacaaaccatcgtcttcctctactctctctataaggagggc
cacacgaagggtccctttctggtgagtgctccactctctaccatcattaactgggagcgg
gagttccagatgtgggcaccgaagttctatgtggtgacatacacgggtgacaaggacagc
cgggccatcattcgtgagaatgagttttcctttgaagacaacgccatcaaaggtggcaag
aaagctttcaagatgaagagggaggcccaggtgaagttccacgttctcctgacatcatat
gagctgatcaccattgatcaggcagcgcttggctccatccgctgggcctgtctcgtggtg
gatgaggcccatcggctcaagaacaaccagtccaagtttttcagggtcctcaatggctac
aagatagatcataagttgctgctgacagggacgccattgcagaataatctggaggagctc
ttccatctcctgaacttcctcaccccagagaggtttaacaacctggagggcttcctagag
gagtttgctgacatatccaaagaagaccagattaagaaacttcatgacttgctggggcca
catatgctgcggaggcttaaggccgatgtctttaagaacatgccagccaagacagagctc
atcgttcgcgtggagctgagccccatgcagaagaaatactacaagtacatcctgacccgc
aactttgaggccttgaattcacgaggtggtgggaaccaagtgtccctgcttaacatcatg
atggatctcaagaagtgctgcaaccatccgtacctcttccctgtggctgctatggagtcc
ccgaaacttcccagtggggcttatgagggtggggcacttattaaggcatctgggaagctc
atgctgctgcagaagatgctgcggaagctcaaggagcaaggacacagagtgctcatcttc
tcgcagggctgttggaagttgtcatccagcttctttgaagccaaaaggggagaagtggaa
gggggagccacctgcctcctgaaggagatgaccaaaatgttagacttgctagaggacttc
ctcgactacgaaggctacaagtatgagcgcatcgatggtggcatcactggcgccctgagg
caggaggccatcgaccgctttaatgctcctggggcccagcaattctgcttcctcctgtct
acccgagctggaggcctgggcatcaatctcgccacagcagacactgtcatcatctttgat
tctgactggaacccccataatgacatccaggccttcagccgtgctcatcggatcggccag
gccaacaaagtgatgatttaccgatttgtgactcgcgcatcagtggaagagcggatcaca
caggtggccaagcgaaagatgatgctgacacacctggtggtgcggcccgggctgggctcc
aaggcaggctccatgtccaagcaggagctggacgacatcctcaaatttggcactgaggag
ctatttaaggatgaaaatgagggagagaacaaggaggaggacagcagcgtgattcactac
gacaacgaagccatcgctcggctgctggaccggaaccaggatgcaactgaggacaccgac
gtgcagaacatgaacgagtacctcagctccttcaaggtggcccagtacgtggtgcgggaa
gaagacaagattgaggaaatcgaacgagagatcatcaagcaggaggagaacgtggatcct
gactactgggagaagctgctgcggcaccactacgagcagcagcaggaggacctggcccgg
aaccttggcaaaggcaagcgggtccgcaagcaggtgaactacaacgatgctgctcaagag
gaccaagataaccagtcagaatattcagtgggatcagaggaggaggatgaagactttgat
gagcgtcctgaagggcgtcgacagtccaagaggcagctccggaatgaaaaagacaagccg
ctgcctccactgctggctcgagttgggggcaacattgaggtgctggggttcaacacccgt
cagcggaaagccttcctcaacgccgtgatgcgctggggcatgccgccgcaggacgccttc
accacccagtggctggtgcgcgacctgaggggcaagacggagaaggagttcaaggcctat
gtgtctttgttcatgcgccatctctgtgagcccggggcagacggctctgaaacctttgcg
gacggggtccctcgggagggactgagtcgccagcaagtgttgacccgcattggagtcatg
tcactcgtcaagaagaaggttcaggagtttgagcacatcaacgggcgctggtctatgccg
gagctgatgcctgaccccagcgctgactccaagcgctcctccagagcctcctctcctacc
aagacctcccccaccactcctgaggcttctgctgccaacagtccttgcacctcgaaacct
gctactccagctccaagtgagaaaggagagggcatgaggacacctctggagaaggatgaa
gcagaaaaccaggaggagaagccagagaagaatagcaaaactggggagaagatggaggca
gaggcggacactcccagcccagccccgtcacttggggagcggctggagccaaggaaggtt
cctctagaggatgaggggccagggggacctggagagatggagcctgaacctgggtaccgg
ggggacagagagaagtcagccacagagtcgacgccaggagagaggggggaggagaagccg
ttggatggacaggaacagagggagaggccggagggggagacaggggatttgggcaagaga
gccgaagacgtgaaaggggaccgggagctccgacctgggcctcctcgagacgagctgcgg
tccaatgggcgacgcgaggagaaggtggagaagccgcggttcatgttcaacattgcagac
ggtggcttcacagagcttcacacactgtggcagaatgaggaacgggcagctatttcctcg
gggaaactcaatgagatctggcaccgaagacatgactattggcttctggctgggattgtc
ctccatggctacgcacggtggcaggacatccagaacgatgctcagtttgccattatcaac
gagccatttaaaactgaagctaataaggggaactttctggagatgaaaaataagttcctg
gcccggagattcaagctcctggagcaggcgctggtgatcgaggagcagctgcggcgggcg
gcctacctgaacctatcacaggagccggcgcaccccgccatggccctccacgcccgcttc
gccgaggccgagtgcctggccgagagccaccagcacctctccaaggagtcgttggcgggg
aacaagccggccaacgccgtcctgcacaagggtaagggccgcggcggccccgcgcggggg
agggcccacaacgctgcttctgaaccagctggaggagttgctgagcgacatgaaggcgga
cgtgacccgcctgccagccacgctgtcccgaataccccccatcgcagcccgccttcagat
gtccgagcgcagcatcctcagccggctggccagcaagggcacggagcctcgccccacacc
ggccttccccccgggtccctacgccacacctccggggtacggggcggccttcagcgccgc
acccgtaggggccctggccgccgcaggcgccaattacagccagatgcctgcagggtcctt
catcacagccgccaccaacggccctccagtgctggtgaagaaggagaaggaaatgatggg
ggcgttggtgtcagacgggctggatcggaaggagccccgagccggggaggtgatctgtat
agacgactgaccggatcccagacctgcccttcacccaggcctcgttcccgaggccgaccc
ccagctcaggctctggggcctgctgccagtcctccgccttccccaccccttgggccacca
ctgggctag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (11)   
   RefSeq(pep) (11)   
DNA sequence (15)   
   RefSeq(nuc) (11)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (98)   

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