KEGG   Sus scrofa (pig): 100511993
Entry
100511993         CDS       T01009                                 
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100511993 (CNOT1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100511993 (CNOT1)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100511993 (CNOT1)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100511993 (CNOT1)
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT
Other DBs
NCBI-GeneID: 100511993
NCBI-ProteinID: XP_020949612
Ensembl: ENSSSCG00000002799
Position
6:complement(20271593..20372300)
AA seq 2382 aa
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLACLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRMA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKHAWADDVAQIYDKCITELEQ
HLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHFTEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRAQ
AEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVL
LQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGF
VYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKG
TLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDM
LSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq 7149 nt   +upstreamnt  +downstreamnt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggataattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcaccagactcagtttctgattcaggagtgtgcgtca
ctgattacgaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagttcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctactctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacgctgcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacagaatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctttggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagcattgaagaatgtcgcaatataatcatgcaattt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttgggaatgatggctcgtact
cattcaggattaacagatggaattccattacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgatggagcacaggcacatacatggaatgtagaagtc
ttgattgatgttctcaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ttggaccatcctggatttcaaattcgtgacagtaagggacttcataatgtggtgtatggc
attcagaggggtctaggtatggaagtgttccctgtagacctcatatacagaccttggaaa
catgccgaaggccagctctccttcattcagcattcccttataaacccagagatcttctgt
tttgccgactatccctgtcatactgttgccactgatatcctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctcttctgaggctc
gcagaggtggggcaatatgagcaagtcaaacagctcttcagcttccctatcaaacactgt
ccagacatgctggtattggccttactacaaataaacacctcctggcacaccttacgccat
gaactcatctccactctgatgccaattttccttggaaaccaccctaactcagctataatt
ttgcactatgcatggcatgggcagggacagtctccctcaatccgccaacttatcatgcat
gcaatggcagaatggtacatgcgaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataagattcgagagcatggagagccttttatccaggcttgtatgactttttta
aagagacggtgtccttccattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctccagaaactctagcaacaatgttggcctgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcaccatggtagccaactgtagtaatgtt
atgaacaaggccagacagccacctcctggagttatgccaaaaggacgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgatcctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggctttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacccctttcaacccca
aatcagacaactgcgttcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccccgcagtgaat
aatgatccttttgtacagaggaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagagaatatataatcacccacca
catccaaccatgtctgttgatgaggtattagaaatgctacagaggtttaaagattctacc
ataaagagggaacgagaagtatttaattgtatgctaaggaacttgtttgaagaatatcga
ttcttcccccagtaccctgataaagagttacatataacagcctgcctgtttggtgggata
attgaaaaaggactggtcacttacatggcactcggtctggccctacgatatgttcttgaa
gccttacgcaaaccttttggatccaaaatgtattattttgggattgctgcactagataga
tttaaaaatagattgaaggactatccacagtattgtcagcacttggcttctatcagtcac
tttatgcagtttccacatcatttacaagagtatattgagtatggacagcagtctcgagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggct
caggcccaggcccaggttccggcaaaagctccccttgctggtcaggttagcaccatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaggccaaccggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagatacattgcttgtg
gccacagatcaaactgagagaatcgtagagcctccagaaaacatccaagagaaaattgct
tttatctttaacaatctctcacagtcaaatatgacacaaaaggttgaagaactaaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctagttatgaagagagtcagt
attgagccaaactttcacagcctgtattcaaactttcttgacacactaaagaatcctgag
tttaataagatggttctgaatgagacctatagaaacatcaaggtgctcctgacctctgat
aaagctgcagccaatttctctgatcgttctttgctgaagaacttgggacattggcttgga
atgatcacacttgctaaaaataaacccatcttacacactgacttggatgtaaaatcgttg
ctgctagaggcttatgttaaaggacagcaagagttgctctatgtcgtgccctttgttgcc
aaagtcttagagtctagcattcgtagtgtggtttttaggccacccaacccctggacaatg
gcaattatgaatgtattagctgagttacatcaggaacatgacttaaagctaaacttgaag
tttgagattgaggtcctctgcaaaaatcttgcattagacatcaatgagctaaaacctgga
aacctcctaaaggataaagatcgcctaaaaaacttagatgagcagctctctgctccaaag
aaagatgttaagcagccagaagagctccctcctatcacaaccacaacaacttctacaaca
ccagctaccagtaccacctgtacagccactgttccaccacagccacagtacagttaccat
gacatcaatgtctattccctcgcctgcctggcaccacacattactctaaacccaacaatt
cccttgtttcaggcccatccacagttgaagcagtgtgtgcgccaagcgattgaacgggct
gtccaggaactggtccatcctgtggtggatcgatcaattaagattgccatgactacttgt
gagcaaatagtcaggaaggattttgccctggattctgaggaatctcgaatgcgaatggca
gctcatcacatgatgcgtaacttgacagctggaatggctatgattacttgcagggaacct
ttgctcatgagcatatctaccaacctgaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtggaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgcaggtac
tgtgatcctgttgtgttaacataccaagctgagcggatgccagagcaaatcaggctaaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagagtttgcacgtaatgtgcct
ggcttcttgcctacaaatgatttaagccagcccacaggatttttagctcagcccatgaag
catgcttgggcagatgatgtagctcagatttatgataagtgcattacagaactggagcag
caccttcacgccatcccaccaactttggccatgaacccccaagctcaggctcttagaagt
cttttggaggttgtagtattatctcgaaactctcgggatgccatagctgctcttggattg
ctccagaaggctgtagagggcttactagatgccaccagtggtgctgatgccgacctcctg
cttcgctacagggaatgccacctcttggtcttaaaagcccttcaagatgggcgagcatat
gggtcgccatggtgtaacaaacagatcacaaggtgcctaattgaatgtcgggatgaatat
aaatataatgtggaggcagtggagttgctaattcgtaatcatttggtcaatatgcagcag
tatgatcttcacctagctcagtcaatggagaatggtttaaactacatggctgtggcattt
gctatgcaattagtaaaaatcctactggtggatgaaaggagtgtagcccattttactgag
gcagacctgttccacaccattgaaaccctcatgaggattaatgctcactccagaggcaat
gctcctgaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatgatt
gatcgtgctcatggaggccctaattttatgatgcattctgggatctctcaagcctcagag
tatgatgatccccccggcctgagggagaaggcagagtatcttctgagggaatgggtgaat
ctctaccattcagcagcagctggtcgtgacagtaccaaagctttctctgcgtttgttgga
caggtagagcttttggaaagaaagatgcaccagcaaggaatcttgaagactgatgacctc
ataacaaggttctttcgtctgtgtactgaaatgtgtgttgaaattagttaccgtgctcag
gcagagcagcagcacaatcctgctgctaatcccactatgatccgagccaagtgctatcat
aacctggatgcctttgtccgactcattgcactgctagtgaagcactcaggggaggccacc
aacactgtcacaaagattaatctgctgaataaggtccttggtatagtagtgggagttctc
ctacaggatcatgatgttcggcaaagtgaatttcagcagcttccctaccatcgaattttt
attatgctgctcttggaactcaatgcacctgagcatgtattggaaaccattaattttcag
acacttacagctttctgcaacacattccacatcttgaggcctaccaaagctcctggcttt
gtgtatgcttggcttgaactgatctcccatcggatatttattgcaagaatgctagcacat
acgccacagcagaagggatggcctatgtacgcacagctactgattgatttattcaaatat
ttagcgcctttccttagaaatgtggaactcacgaaacctatgcaaatcctctacaagggc
actttaagagtgctgctggttcttttgcatgatttccctgagttcctttgtgattaccat
tatggattctgtgatgtgatcccacctaattgtatccagctaagaaatctgatcctgagt
gccttcccaagaaacatgaggctcccagacccgttcactcctaatctgaaggtggatatg
ttgagtgaaattaacattgcaccccggattctcaccaatttcactggagtgatgccacct
cagttcaaaaaggatttggattcctatcttaaaactcgatcacccgtcacttttctgtct
gatctgcgtagcaacctacaggtatccaatgagcctggcaatcgctacaacctccagctc
attaatgcactggtgctctatgtagggactcaggccattgcacacatccacaacaagggt
agcacgccttcaatgagcacgatcacccactcggctcacatggacatcttccagaacctg
gctgtggacttggacactgaaggtcggtatctcttcttgaatgcaattgcaaatcagctg
cggtacccaaatagccacactcactacttcagctgcacaatgctgtacctttttgcagag
gccaacactgaagctatccaagaacagatcacaagggttcttttggaacggttgattgta
aataggccacatccttggggtcttcttattaccttcattgagctgattaaaaacccagcg
ttcaagttctggaaccatgagtttgtacactgtgccccagaaattgaaaagttattccag
tcggtcgcgcagtgctgcatgggacagaagcaggctcaacaagtaatggaagggacaggt
gccagttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (13)   
   RefSeq(pep) (13)   
DNA sequence (22)   
   RefSeq(nuc) (14)   
   GenBank (4)   
   EMBL (4)   
Protein domain (5)   
   Pfam (5)   
All databases (95)   

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