KEGG   Sus scrofa (pig): 100516073
Entry
100516073         CDS       T01009                                 
Symbol
APLF
Name
(RefSeq) aprataxin and PNK-like factor isoform X1
  KO
K13295  aprataxin and PNK-like factor [EC:3.1.-.-]
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssc03400]
    100516073 (APLF)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     100516073 (APLF)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     100516073 (APLF)
SSDB
Motif
Pfam: zf-CCHH FHA_2 FHA Yop-YscD_cpl HUN
Other DBs
NCBI-GeneID: 100516073
NCBI-ProteinID: XP_005662556
Ensembl: ENSSSCG00000008346
Position
3:complement(73752115..73831158)
AA seq 519 aa
MSGGFELQPQDGGPRVALAPGETVIGRGPLLGITDKRVSRRHAILEVVDGQLRIKPIHTN
PCFYQSSEKSQFLPLKTNLWCWLNPGDSFSLLVDKYIFRVFSTHSEMEMECTLRNSQMLD
EDELNETPKSSSVDLPDEIPQPAPQLERGIEIVKTQTTMNSVSFLGESRDFSKQQPNPAQ
RKRILPAWMLTENLSDQNLSVAVISGDGETKAQRDNNLIRESGKEEICKDKTQVNIKHQG
RKRLISSGSSESISAEQDTGKKCKDADWEESVISSKEMPQSRFTNTLHNTEVNKVKTNTQ
RNETPVEELGEVSEQKITAKGTPNKVDKVRSCAESCSSAQGTSSLDESQRSHPESSSHPF
NPETLHAEATRSVPQGSEENKLKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGDVHVTCQ
DEADERPECPYGASCYRKNPQHKIEYRHSTFPVRSISDEDDSVGQPNEYDLNDSFIDDEE
EEYEPTDEDSDWEPGKEDLEKEDTEELLKEAKKFIKRKK
NT seq 1560 nt   +upstreamnt  +downstreamnt
atgtccggaggcttcgagctgcagccgcaggacggcggtccccgggtggccctggcgccc
ggggagacggtgataggccgcgggccgctgttgggaataacagacaagagagtgtccaga
agacatgccattcttgaggtagtggatggtcagcttcgaatcaaaccgatacacacaaat
ccatgtttttatcagtcttctgagaagagccagttcttaccattgaagacgaatctgtgg
tgctggttgaatcctggagatagcttttctttattggttgacaaatacattttccgtgtt
ttctccacacattctgaaatggaaatggaatgtactttaaggaacagtcagatgcttgat
gaagatgaattgaatgaaacaccaaaatcttcctcagttgatttgcctgatgagataccg
cagccagccccacagctggaaagaggcatagaaatagtaaagacccaaaccactatgaat
agtgtgtctttcctaggtgaaagtagagacttcagtaagcaacagccaaaccctgcccag
aggaaaagaatccttccggcatggatgttaacagaaaatctaagtgatcaaaacctttca
gtagcagttatcagtggagatggtgaaaccaaagctcagagagataataatttaatccgg
gaaagtggaaaagaagaaatctgcaaagataagacccaagtaaacataaaacatcaagga
agaaaacgattaatttcatcaggaagttcagaaagtatatcagcagagcaagacacagga
aaaaaatgtaaagatgctgattgggaagagtctgtcatttcatccaaggaaatgccacaa
tcacgttttacaaacacattacacaatacagaagtgaataaagtgaaaactaatacacag
agaaatgaaaccccggtagaggaacttggtgaggtttctgaacaaaaaatcactgctaag
ggaacaccaaataaagtcgacaaggtgaggagctgtgctgagagctgttcaagtgcccaa
ggcacatcctccctggacgaatctcaaaggtctcatcctgagtccagctctcatcctttc
aatcctgaaactttgcatgcagaggcaaccaggtcagttccacagggttctgaagaaaac
aagctcaagaggacatcttgcatgtatggggcaaactgctacaggaagaatcctgtccat
tttcaacacttcagtcaccctggtgatagtgattatggagatgtacatgtcacgtgtcaa
gatgaggctgatgagcggcctgaatgtccttatggagcatcttgttatcggaagaatccc
cagcacaagatcgaatatagacatagtacatttccagtgagaagcatttcagacgaagat
gacagtgttgggcaacccaatgagtatgacctgaatgacagctttatagatgatgaggaa
gaggaatacgagccaacagatgaagattccgactgggaaccaggaaaggaagacctagag
aaggaagatacggaagagcttttaaaagaagcaaaaaagtttataaaaagaaaaaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (5)   
   Pfam (5)   
All databases (48)   

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