KEGG   Sus scrofa (pig): 100516642
Entry
100516642         CDS       T01009                                 
Symbol
COL6A6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
  KO
K06238  collagen type VI alpha
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04151  PI3K-Akt signaling pathway
ssc04510  Focal adhesion
ssc04512  ECM-receptor interaction
ssc04820  Cytoskeleton in muscle cells
ssc04974  Protein digestion and absorption
ssc05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100516642 (COL6A6)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100516642 (COL6A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100516642 (COL6A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100516642 (COL6A6)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100516642 (COL6A6)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100516642 (COL6A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssc04147]
    100516642 (COL6A6)
   00536 Glycosaminoglycan binding proteins [BR:ssc00536]
    100516642 (COL6A6)
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   100516642 (COL6A6)
Glycosaminoglycan binding proteins [BR:ssc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100516642 (COL6A6)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   100516642 (COL6A6)
SSDB
Motif
Pfam: VWA VWA_2 Collagen VWA_3 Radical_SAM Usp
Other DBs
NCBI-GeneID: 100516642
NCBI-ProteinID: XP_020926990
Position
13:complement(1817475..1985968)
AA seq 2268 aa
MKMLLVFFLMIICAHVSVNQHPGPEYADVVFLVDSSDHLGIKSFPWVKMFINKMISSLPI
EADKYRVGLAQYSDGLHNEFQLNTFKSKGPMLNHLKKNFGFLGGSLRIGNALXEVHRTYF
SSRRDRKQYPPILVVMASADSEDAVEEAAEALRKDGVRIISVGMQRVSEETLKAMATGQF
RYNLRTVRDLSAFSQNMTQILKEAIQYKDGTVNDILVEVCKGSSVADVVFLLDVSINGSW
EDFDYLKEFLEESVSALDIKENCMRVSLVAYSNETKVLNPLSRGINKSEILQHIQSLSPR
TGKVYTGAALRKIRKDVFTAQNGSRKNQGVPQIAVLVTHSPSADNVTKAAVNLRRQGVTV
FTLGMEGASDTQLEKIASHPAEQYISKLKSFSDLAAHNQTFLKKLRKQITHTVSVLSEWT
ETLKSGCVDTEEADIYLLIDGSGSTQATDFQEMKTFLSDVVGMFNIAPQKVRVGAVQYAD
RWDLEFEINKYTNKHDVGKAIENIRQMGGNTNTGAALNFTLGLLQKAKQQRGNRVPYHLV
VLTNGVSQDSVVGPANRLREELVHIYAIGVKEANQTQLREITGEEKRVYYVHDFDALKDI
KNQVVQEICAEEACKEMKADIMFLVDSSGSIGLENFIKMKTFMKNLVSKSKIGADRVQVG
VVQFSGDSKEEFQLDRYMSQSEIADAIDRMAHIGQNTCTGSALTFVSQYFSPAKGARPNV
RKFLILITDGEAQDVVKDPAEALRQKGIIIYSVGVFGSNVTQLEEISGRPEMVFYVENFD
ILQHIEDDLVFGICSPREECKRIEVLDVVFVIDSSGSIDHDEYNIMKDFMIGLVKKADVG
KNQVRFGALKYAKNPEVLFYLDRLGTKWEVISELQNDQPIGGDTYTAKALDFSDHMFTED
RGSRLHQGVPQVLIVITDGKSHDADELNATAKALRDKGILVLAVGIEGANVEELLAMAGS
SDKYFFVETFGGLKGIFSDVSTSVCNSSKVDCEIEKVDLVFLLDGSNSIHPEDFKKMKNF
LASVVQDFDVSVNRVQIGAAQFSHTYRPEFPLGMFTGKKEISFQIENIQQIFGYTHIGEA
LRQVGHYFRPDTGSRINAGTPQVLLVLTDGKSQDEVAQAAEELRHKGIDIYSVGIGDVDD
QQLVQITGTADKKLTVHSFDELRKVKKRIVRNICTSGGDSNCFVDIVVGFDISTQQNGQT
LLEGQSWMETYLQDILRAISSLSGVSCEVGTETQVSVAFQVTNAIEKYSPKFEIYSENIL
KNLKDITVKGPSLLNANLLSSLWDAFQNKSAARGKVALLFSDGLDDDVEKLEQKSEELRK
EGLNALITVALDGATDSSDLADLLYIEFGKGFEYRTQFTLGMRDLGSRLSRQLVNVAERT
CCCLFCKCVGEDGTMGEPGPAGKKGPPGFKGSDGYLGEEGIAGERGATGPVGEQGTKGCY
GAKGPKGSRGLNGQEGEVGESGIDGLNGEQGDGGFPGVKGEKGDEGAQGIPGKRGISGDH
GPKGLRGDPGVPGFDNSIEGPKGLKGEQGRQGRRGWPGPPGMPGTRRKTAAHGRRGHTGP
QGEIGIPGPDGLAGSLGLKGPQGPRGEAGAKGEKGSLGSKGPQGLPGPAGEAGIQGRLGS
QGNKGEPGLLGEKGAIGLPGPRGLTGDDGNPGYGGIGNKGAKGQEGFPGEIGLKGEIGDP
GSPGETGPKGATGKTVSAGLPGEPGSPGELGPPGRKGVKGAKGLASFSTCELIQYVQDHS
PGRRGEPRCPAHPTELVFMLDQSRGVTEPEFLRMKEMMLSLLRGLRVRENHCPAGARVAV
LSYDSHARLLIRFSDAYKKDRLLREIEALPYERSLAARDIGKAMRFVSRNVFKRMLPGAH
TRRIATFFSSGQSNDAXTITSAALEFSALDIIPVVIAFTNVPSVRRSFAIDDTGTFQVIT
VPSGTDYTPALEGLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDGSRHMGGAEFE
DIRGFLGALLDHFDITPEPETSVTGDRVALLIHAPPNFLPNTQRSPVKTEFNLTTYRSKR
LMKRHVEESVQQLSGEAFIGHALQWTLDNIFFRTPNPRRNKVIFVISAGETSHLDQEILK
KESLRAKCQGYALFVFSLGPSWNDQELEDLASYPLDHHLVQLGRIHRPDHRYGVKFMKAF
ISSVRRAINKYPPINIKAKCNRLSSTNPQQPPRQLRSFVPGPHRATLKEDALQKVKFFQR
RNYLSRVARGSRDNTVQHFTRNIPSIFRNGKRVIETAPKYDERSTPRV
NT seq 6807 nt   +upstreamnt  +downstreamnt
atgaaaatgctgctggtttttttcctcatgataatttgtgcccatgtttctgtcaaccaa
catcctggccctgagtatgccgacgtggtgtttctggtggacagctccgaccacctggga
attaaatccttcccatgggtgaagatgttcatcaacaagatgatcagcagcctccccata
gaggccgacaagtaccgcgtgggcttggcccagtacagcgacgggctccataatgaattc
caactcaacaccttcaagagcaaaggccccatgctgaaccacctcaagaagaacttcggg
ttcctgggtggctccctgcgcattggaaacgcactcncggaggttcacaggacctacttc
tccagtaggagggacaggaaacagtatccccccatcctggtggtcatggcttccgcagac
tccgaggatgccgtggaagaggccgctgaggccctgcgcaaagatggagtgaggattatc
tctgtggggatgcagagggtgtccgaggagaccctgaaggccatggccacgggccagttc
cgctacaacctccgaacagtcagagacctcagcgccttctcccaaaacatgacgcagatc
ctcaaggaagcaattcagtacaaggatggaacagtcaatgacattcttgtggaagtttgc
aaaggttcttctgtggctgatgttgtgttcctgttggatgtatccatcaatggcagctgg
gaggattttgactatcttaaagaattcctggaagaaagtgtgtctgctctggacatcaag
gaaaactgcatgagggtcagcctcgtggcctatagcaatgagacaaaggtgcttaacccg
ctgagcaggggcataaacaagtcggagattctccagcacatccagagcctctctccccgg
actgggaaggtctacaccggagctgccttgagaaagatcaggaaggatgtcttcactgca
cagaatggcagtcggaagaatcagggggtgcctcagatcgccgtgctggtgacccacagc
ccatcagcggacaacgtgaccaaggctgccgtgaacctccggcgccaaggggtgaccgtc
ttcaccctgggcatggagggggccagcgacacccagctggagaagatcgcctctcaccct
gccgagcagtacatctccaaactgaaaagcttctctgacctggccgcccacaaccagacg
tttctgaagaagctgagaaaacagataactcatactgtctctgtgctatctgaatggact
gaaaccctcaaatctggttgtgtggacactgaggaagccgacatctacctgctcatcgat
ggctctgggagcacccaggccacagacttccaggaaatgaagaccttcctgtcagatgtt
gtaggaatgttcaacatcgctccccagaaagtgcgggtcggggctgtccagtatgccgac
cgctgggacttggaatttgagatcaataagtacacaaacaagcacgacgtgggaaaggcc
attgagaatatcaggcagatgggcggcaacacaaacacgggtgcagccctgaacttcacc
ctggggctgctgcagaaagcgaagcagcagcggggaaacagagtcccataccacctggtg
gtcctgaccaatggtgtgtcccaggacagcgtcgtggggccagcaaacaggctaagagag
gagctggtccatatctatgccattggggtcaaggaggccaaccaaacacagctgcgtgaa
atcacaggcgaagagaagcgggtgtactacgtgcatgactttgatgccttgaaagatata
aaaaaccaggttgttcaagaaatctgtgctgaagaagcttgcaaagagatgaaggctgac
atcatgtttctggtggacagttctggcagtataggacttgaaaacttcatcaaaatgaag
acatttatgaaaaacctggtgagcaaatctaagattggagcagatcgggtgcaggttggc
gtagtccagttcagtggtgacagtaaggaagagtttcagcttgatagatacatgtcccag
agtgagattgcagatgcgatagacagaatggctcacattggacaaaatacctgcaccggg
agtgccttgaccttcgtgtctcagtacttcagccctgccaagggggcccggcccaatgtc
aggaagttcctcatcctcatcacagacggtgaagctcaggatgtagtcaaggacccggca
gaggcacttaggcaaaaaggcatcattatctactccgtgggggtgtttggctccaatgtc
acccagctcgaggagatcagcgggagacctgagatggttttttatgttgaaaattttgac
attctgcagcacattgaagatgatcttgtttttgggatctgcagcccccgtgaagaatgc
aagcgcattgaagttttagatgtcgtgtttgtaattgacagctctggcagcattgaccat
gatgagtataatatcatgaaggactttatgattggcttggtgaaaaaagctgatgtaggc
aagaatcaggtccggttcggggctctgaagtatgccaaaaacccggaggttctgttttat
ctggatagacttggcacaaaatgggaggtgatctccgagctccagaatgaccagcccatt
ggaggcgacacttacacggccaaggccctggacttctcagaccacatgttcactgaagat
aggggcagccgcctgcaccaaggggtcccccaggtcctcatagtgatcactgatgggaaa
tcccatgatgctgatgagctcaatgccactgccaaggctttgcgggacaagggcattctc
gtcttggccgtggggattgaaggtgccaatgttgaggagctgctggccatggcaggatcc
agcgacaagtacttctttgtggaaacctttggaggcctgaaagggatattttcagatgtg
tccaccagtgtgtgtaactcttccaaagtagattgtgaaattgaaaaggtcgatctcgtg
ttcctcctggatggttcaaacagcatccatccagaagacttcaagaagatgaagaatttc
ttggcgtctgtcgttcaagacttcgatgtcagtgtcaacagagtgcagataggagctgca
cagttcagtcacacctaccggccagagtttcccctgggaatgttcactggcaaaaaggag
atctcatttcagattgagaacatccagcaaatcttcggatacacgcacattggtgaagcg
ctccggcaggtggggcactacttccggccagacacgggcagcaggatcaatgcagggacc
ccacaggtgctgctggtcctcacggacggcaagtcccaagacgaggtggcgcaggccgcc
gaagagctgagacacaaaggtatcgatatttactccgtgggcattggagatgtggacgac
caacagctcgttcagatcaccggcaccgcggataaaaaactgaccgtgcacagctttgac
gaactgaggaaggtcaagaagaggatcgttcgcaacatttgtacctcagggggcgacagc
aattgctttgtggacattgtggtgggatttgacatctcaactcagcaaaatggacagact
ttgctcgaaggtcagtcttggatggaaacttatcttcaagacatcttacgtgccattagc
tccctcagtggggtaagctgtgaggtgggcacagagactcaggttagtgtggcttttcaa
gtgaccaatgccatagaaaaatattccccaaagtttgagatctacagtgaaaacatactg
aaaaacttgaaggatataacagttaaaggaccatctcttctcaacgcaaatctcttgagt
tctctatgggatgcatttcagaataaatctgctgctcgaggaaaggtggctctcttattt
tcagatggattggatgatgatgttgaaaaacttgaacaaaaatctgaagaacttagaaaa
gaaggtttgaatgccctcatcactgttgctctggatggagccactgattccagtgacctg
gctgatcttctctacattgaatttgggaaaggatttgagtataggacccagttcactctt
ggaatgagggacctaggcagccgactgtcaaggcagctggtcaatgttgcagaaaggaca
tgctgctgtttattctgcaagtgcgtcggagaagatggcacaatgggagaacctggacca
gcagggaaaaagggacccccaggttttaaaggcagcgacggctacctgggagaggagggc
attgctggggaaagaggagccactggaccagtgggagagcaaggtactaagggatgctat
ggcgccaaaggtcctaagggaagcaggggactgaatggacaggagggagaagttggggaa
agcggaattgatgggttaaatggagagcagggtgacggtggttttcccggggtaaaagga
gaaaaaggcgatgaaggagcccagggaatcccggggaaaagagggatttctggtgaccat
ggaccaaagggcctacgaggagaccctggagttcctggatttgacaatagcatagaagga
cccaagggcttgaaaggagaacagggaagacagggaagaagaggctggccaggcccccct
ggaatgccaggcaccaggagaaagacagcagctcatggccggaggggacatacaggccca
cagggggaaataggcatcccaggcccagatggacttgcaggctcactgggactgaagggc
cctcagggcccaagaggagaggctggtgcaaaaggagaaaaaggaagtctgggcagtaaa
ggtccccaggggcttccaggaccagcaggagaggcagggattcaaggccgtttgggaagc
caaggaaataaaggagaacctggccttctgggagaaaagggagccattggtcttccaggt
cctcgaggcttgacgggtgatgatggcaacccaggttatggtggcatcggaaataaagga
gcaaagggccaagagggattccctggagaaattggacttaagggtgagattggggaccct
gggagtccaggagaaactggacccaagggagctacaggcaagacggtgtctgctgggctt
ccaggagagccaggatccccaggggagctgggacctcctggacgcaagggcgtgaaaggg
gccaaagggttggcttcattctccacatgcgagctgattcagtatgtgcaggatcacagt
cctggaagacgtggagaaccgcggtgcccagcacatcccactgagctggtgtttatgctg
gaccagtcccggggtgtcacggagccggagttcctacggatgaaggagatgatgttatcc
ctgctgcgtggcctccgggtccgggagaaccactgccccgcgggtgcgcgcgtggctgtg
ctctcctatgactcccacgccaggctcctcatccgcttctccgatgcctacaagaaggac
cgactcctcagggagatcgaggccctcccttacgagcggtccttggctgccagggacatc
ggcaaggccatgaggtttgtctccaggaacgtcttcaagcggatgctcccaggggctcac
accaggagaatcgccacgttcttcagcagcggccagtccaatgacgccnagaccatcacc
tcagccgccttggagttcagcgctctggacatcatcccggtggtgatcgccttcaccaac
gtgccctccgtccggcgctcatttgcgattgacgacactggcactttccaagtcatcaca
gttccatccgggactgactacacaccagccctagagggactccaacggtgcactttttgc
tatgatgtgtgcaagccggatgcttcctgcgatcaagccagaccaccccctgtgcaatct
tacatggatgctgcgttccttctggatggctcccggcacatgggaggggcagaatttgaa
gacatcagaggcttcctgggagccctgttagatcacttcgacatcaccccagagcccgag
acctctgtcactggagaccgggtggccctcttaatccacgctccccccaacttcctgccc
aacactcagaggagtcccgttaaaactgagttcaatctcaccacctacaggagtaaacgc
ctcatgaagaggcatgtggaagagtcagttcagcaactcagtggagaagcttttattggt
catgccttacagtggactctagacaatatcttcttcaggacacccaacccaagaagaaac
aaagtcatttttgtgatatctgctggggaaaccagtcacttagaccaggaaatcctaaag
aaagaatccttgcgagccaagtgtcaaggttatgccctgtttgtgttttcccttggccct
tcttggaatgaccaggaacttgaagacctagccagctaccctttggatcaccacttggtt
cagcttggccgcattcataggcctgaccacagatatggcgtgaagtttatgaaggctttt
ataagctcagtcagacgtgcaatcaataaatatccaccaataaatatcaaagctaaatgc
aacagactcagctctacaaatccacagcagcccccaaggcaattgagaagttttgttcct
ggaccacatagagctaccctcaaagaagatgcattacagaaggtaaaattctttcaacga
agaaactatctttcaagagtagcaagaggcagcagagataatactgttcagcattttacc
agaaacataccctctatctttagaaacggaaaaagggtgatagaaactgctcccaaatat
gatgaaagaagcactccaagagtttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (62)   

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