KEGG   Sus scrofa (pig): 100521438
Entry
100521438         CDS       T01009                                 
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-1
  KO
K16494  protocadherin beta
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:ssc04515]
    100521438
Cell adhesion molecules [BR:ssc04515]
 Cadherins
  Protocadherins
   100521438
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_C_2 Cadherin_3 PLAC8 Cadherin_4 Ly49
Other DBs
NCBI-GeneID: 100521438
NCBI-ProteinID: XP_003124097
Ensembl: ENSSSCG00000014377
UniProt: A0A8D1H3M4
Position
2:142741845..142747621
AA seq 818 aa
MAAARRKLLQSRQVGPLLLFLCFSVGGASTIRYSVAEEMESGSFVANVAKDLGLEVGKLA
TRGARLVSEGNKLHFRLHRKTGDLFMKEKLDRESLCGKADPCVLHFEIVLVEPLQSFRVE
VRVFDINDNXPIFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANEYFHL
HTRFRSHGPKYAELVLDKPLDREVQPEVNLTITAVDGGSPPKSGTAHIRVQVLDVNDHVP
QFSRLVYRAQVPENSANGSLVATVTATDLDEGSNKAITYSLAQNPEVILQTFQIDPDTGE
VRLRGALDFEVTETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVTVSSVSSPLPEDS
PLQTVVALFSVRDRDIRVGGKITCFLKEDLPFAVKPTFRNSYSLVTDRRLDREDVSGYNI
TLVATDTGPPTLSSETVIEVLIADINDNPPVFQEDSYILTVRENNSPAVFIGKVHAEDLD
LGENAQVTYSLLPPKSGDLSVFAYISINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFV
SLSSQVSVRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDRDSGQN
SWLSYHLLKATDAGLFSVQQQNGEIRTLRPISERDPRMQKLIILVQDHGQPALSTTASLN
ILLVDGFSEPYLQFQDPFKHPTRVNPSTKYLVISLAVLSFLFLLSVAVIFIIHICQKIKY
REKFTIQEHFYDDCNFPNNLVPGGASGSISQPCPYEMCSATGTGASEFRFLKRFMPNFPF
PHGTGEVKTEAGSSLPPDSDRNRSQGPEGQARASDDYM
NT seq 2457 nt   +upstreamnt  +downstreamnt
atggcggctgcacggagaaaactcttgcaaagcaggcaagtgggacctcttctccttttt
ctgtgcttttctgtggggggtgcatcaaccatccgctattcggtggcagaggagatggag
agcggttcgtttgtggctaatgtggctaaggacttggggctggaggtagggaagctggcg
acgcgcggggcgcggctcgtttccgaaggcaacaaactacatttccggctgcaccgcaag
acgggagacctgttcatgaaggagaaactagaccgggagtccctttgtggcaaagccgac
ccctgcgtactgcactttgaaatagtcctggtggagccgctgcagtccttccgcgtggag
gtcagggtatttgatattaacgacaatngcccgattttcctaaacaaggagcctcttttg
aagattccagagagcacccccttgggttcacggtttcctctgcagagcgcccaggacctg
gacgtgggcctcaacggtctccaaaattacaccttgagtgccaatgagtattttcacctg
cacacccgcttccgcagccatgggcccaagtatgcggagctcgtgctggataaacccctg
gacagagaggtgcagcctgaggtcaacctgacaattacagccgtggacggagggtccccc
cccaagtctggcacggcacacatccgcgtgcaagttctggatgtcaatgatcacgtgccc
cagttctctcgcctggtgtaccgcgctcaagtaccggaaaatagtgccaacggttctttg
gtggccacagtgacggccaccgacctagatgagggctccaacaaggcaataacttactct
ttagctcaaaacccagaagtaattctccagacatttcagatcgaccctgacactggagag
gttcgattacgaggggctctagattttgaagtcacggaaacatacgacattgacattcaa
gctactgatggaggcggcctctccgcccacagcaaagtcctggtggaagtggtggatgtt
aatgacaatcctcctgaagtgacagtctcctctgtgtccagccctctccctgaggattct
ccactacagactgtagtggcccttttctctgtccgcgaccgagacattcgagtgggagga
aaaatcacctgcttcctcaaagaagaccttccttttgcagtcaaacctacattccgcaat
tcctactcactggtcactgacagacgcttggaccgagaggacgtctctggctataatatc
acccttgttgctacggacactggaccacccactctgtcctcggagactgttatagaggtg
ctaatagctgacattaatgacaaccccccagtgtttcaggaagattcctacatcttgact
gttcgagaaaacaacagccctgcagtctttattggcaaagtgcatgctgaggatctagat
ttgggtgagaatgcccaagtcacatattctctgctgcctccaaaaagtggcgatctatca
gtctttgcttatatctctatcaattcagacaatgggaaactctatgcactgagaaccatg
gattatgaggccattcaagattttcagtttgtggtaaaggcaacagatgggggcttcgtg
tcactgagtagccaagttagtgtccgagtggttgtcttggatgacaatgataaccgccca
atgatcttgtaccctctgcagaatggcaccttgccttgcaatgacctggtacccaggtct
gcagaggcaggctacctggtgaccaaggtggtggctgtggatcgcgattcgggtcagaat
tcttggctttcgtatcatttacttaaggccactgatgctgggttattctctgttcaacaa
caaaatggggaaatccgtacattgcggccgatatctgagagagaccccaggatgcagaag
ctgatcattcttgttcaggatcatggccaaccagctctttctactactgcctcactcaac
atccttctggtagatggcttttctgagccttatctgcagttccaggatccattcaaacat
cctacaagggtaaatccatccactaaatatttggtcatttctctggctgtgctttccttt
ctctttctcctctctgtcgcggtgatcttcattatacacatctgccagaagattaaatac
agagaaaagttcacaatccaagagcatttctatgatgactgtaatttccctaacaacctg
gtaccaggaggagccagtgggtccatatcccagccttgtccctatgaaatgtgctcagcc
actggcacgggcgctagtgagttccggtttctcaagcgctttatgcccaacttccctttc
ccccatggcactggagaggtaaaaacagaggctggctccagtttaccaccagattccgac
aggaataggtctcaggggccagaggggcaggcccgagcatctgatgactatatgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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