KEGG   Sus scrofa (pig): 100620724
Entry
100620724         CDS       T01009                                 
Symbol
COL4A6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04151  PI3K-Akt signaling pathway
ssc04510  Focal adhesion
ssc04512  ECM-receptor interaction
ssc04820  Cytoskeleton in muscle cells
ssc04926  Relaxin signaling pathway
ssc04933  AGE-RAGE signaling pathway in diabetic complications
ssc04974  Protein digestion and absorption
ssc05146  Amoebiasis
ssc05165  Human papillomavirus infection
ssc05200  Pathways in cancer
ssc05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100620724 (COL4A6)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100620724 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100620724 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100620724 (COL4A6)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    100620724 (COL4A6)
  09154 Digestive system
   04974 Protein digestion and absorption
    100620724 (COL4A6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100620724 (COL4A6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    100620724 (COL4A6)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100620724 (COL4A6)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    100620724 (COL4A6)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    100620724 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssc04147]
    100620724 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:ssc00536]
    100620724 (COL4A6)
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   100620724 (COL4A6)
Glycosaminoglycan binding proteins [BR:ssc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100620724 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 100620724
NCBI-ProteinID: XP_020935520
Ensembl: ENSSSCG00000012571
Position
X:complement(88634925..88750938)
AA seq 1569 aa
MVDRCPKSLELEGRPNVLAARVILDSQGPEAHLAWMAVMELKEMLDFQALMAILGFSDCL
GHLTVIINIFGHHDWGLLLALDSPQHIIKKSSVPKYQQWVLPLSAARTGEPALGPGEKLE
QRVATLAACLSDQQDPSPSFESIRTPDFLGLTSSSNKDRDHSRVPSLLNGEKGGVGPPGP
DVFIDTDGAVISGYPGDPGMPGLPGLKGDEGIQGLPGPSGVPGLPALSGPQGVPGLKGDQ
GNPGRTTIGPAGLPGRDGLPGLPGLPGPPGPAFETGTLQGLEPGSPGLRGERGPKGNPGP
KGMKGLLEVPPMGLQDGDSDQAHTGQRGSQAPLPAPLHLQEGTRVSVLVMVVFPTLDPQG
SQACLGHQVSWALQALKEPEEIQALGVHRAHQGIPVYLGLKVQQVPKERKGNRASVQDQG
CQAIRVILGCRGSLVSQACQARMEYQVYQVSQAFRGFPGEKGLPGLPGEKXHTGPTGPPG
IGLPGSPGPRGLPGDQGVDGLPGPQGPSGLPGDCCCGEKVGDRDLDTEGGVTLPCVIPGA
YGPPGFPGTPGLPGPKGAHGLPGTPGQPGLRGNKGEPGNPGSVHLPELPGFPGPRGEKGL
PGFPGLPGKDGFPGKVGSPGLPGPKGAPGDIIGAESGAPGEQGLQGLPGDRGFPGDAGLP
GPKGLLGKSGLLGPKGERGSPGTPGHTGQPGPPGPGGLFGIKGKPGLPGAPGFPGTSGHP
GKRGPRGEIGPPASAGKRGLPGLKGLPGSPGLIGFLGNPGSPGATGLPGLPGPKGEKGSV
GLIGFPGIPGLPGIPGASGLKGIPGSAGRVGPSGQAGSPGEKGDRGDPGPVGIPSPRPPM
LNVLFKGDRGSQGSAGSIGFPGPRGDKGEAGFPGPPGLPGAPGLPSIIKGLSGIPGPPGS
TGLRGLPGLKGSPGITGXPGVPGQSGSQGLSGAPGLPGASGLPGLKGDQGQTLGISGSPG
PKGQPGESGFKGVKGKDGPVGDVGFPGNKGEDGNAGIPGAVGLPGSPGLPGVAGMRGNPG
LPGSPGHPGASGPLGPPGLVGTKGFPGLPGLHGLNGLPGTKGTHGTPGPSITGVPGPAGL
PGPKGEKGSPGVGIGAPGNPGVRGQKGSRGFPGLQGPAGLPGPPGHSLPSVIAGQPGDPG
RPGLDGERGRPGPPGPLGPPGPSSDQGDPGDPGFPGIPGPRGPKGDQGIPGFSGLPGALG
LKGMKGEPGFMGIPGKVGPSGDPGFPGMKGKAGPRGLSGPRGAPGQTPIAEAIRAPPGPM
GLPGIDGIPGLTGDPGAQGPIGLQGTKGLPGIPGKDGPTGLPGPPGALGDPGLPGLQGPP
GYEGAPGKQGPFGTAGLPGQSVRVGYTLVKHSQSEQVPLCPIGMSQLWVGYSLLFVEGQE
KAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQSQIP
QYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPG
SCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGEEPVSETLKAGQLHTRVS
RCQVCMKSV
NT seq 4710 nt   +upstreamnt  +downstreamnt
atggttgatcgttgtcctaagagcttagagttggaagggaggccgaatgtgctggctgcc
agggtcatcctggacagccagggcccagaggcccacctggcatggatggctgtaatggaa
ctcaaggagatgttggatttccaggccctgatggctatcctgggcttctcggactgcctg
ggacatttgacagttattatcaacatttttggtcatcacgactggggtttgctactggca
ctggacagcccccagcacatcatcaagaagtcgtctgtcccaaagtatcaacagtgggtc
ttgcccctctccgccgcccgcactggggagcctgctttgggccccggggagaagctcgag
cagagggtggccacgctggcagcctgcctctcagaccagcaggacccgagtccctctttt
gagagcattaggactcctgacttcctcggcctgacatcatcctctaacaaggaccgtgac
catagcagagtcccaagcctcctgaacggcgagaagggtggtgttggcccaccaggcccc
gatgttttcatcgatacagatggtgctgtgatctcaggttatcctggagaccccggtatg
ccaggcctcccaggcctaaaaggagatgaaggcatccagggcctgcctggcccttccggt
gtccctggattaccagctttatcagggccccagggcgttccaggcctgaaaggggaccaa
ggaaaccccggccgcaccacaattgggccagctggcctccctggcagagatggtttgcca
ggcctgccaggcctaccaggcccacccggtccagcatttgagacgggaaccctccagggc
ctagagccagggtctcctggactccgaggagaacgaggtccaaaaggaaacccaggcccc
aaaggaatgaaaggcctgttggaagtgccacctatggggctccaagatggagacagcgat
caagctcacacaggacaaaggggctcccaggctcctctgcctgcccccctccacctgcag
gaggggactcgggtttctgtgcttgtgatggtggtatttccaacgttggacccccagggg
agtcaggcctgcctgggccaccaggtctcctgggccctccaggccctaaaggaaccagag
gagatccaggctctgggggtgcacagggcccatcaggggatcccggtttatttgggcctc
aaggtccagcaggtcccaaaggaaagaaaggggaaccgagcctcagtacaggatcagggt
tgccaggcgatcagggtgatcctgggctgcaggggctccctggtgagccaggcgtgccag
gcaaggatggaataccaggtttaccaggtctcccaggccttccggggcttccctggtgaa
aaggggttaccaggacttcctggtgaaaaanggcacactggtccaactggacccccagga
attgggctaccaggatcgcctggacctcgggggcttcctggagatcaaggagtagatgga
ttaccagggccacaaggtccctctggacttccaggtgactgctgctgcggagagaaggtt
ggggacagagacttagacacagagggaggtgtcaccttgccttgtgttattcctggggct
tacggtccaccaggattcccaggaactcccggactcccaggccctaaaggggcccatggc
ctcccagggacgccaggccagcccggattgcgtggaaataaaggagagcctggaaatcca
ggatcggttcacctccctgaactgccaggatttcctggacctcgtggagaaaagggcttg
cctgggtttcctgggcttcctggaaaagatggcttccctgggaaagtgggcagtccaggc
ttaccaggtcccaagggagcccctggtgacatcattggtgccgagagcggtgctccgggg
gagcaaggcctgcagggactgccaggggacagaggatttcctggagacgctggccttcca
ggacccaagggtttgcttgggaaatcaggcttgctcggccccaaaggtgagcggggcagc
cctggaacaccaggccacacgggacagccaggcccccccgggcctggtggtctattcggc
atcaagggcaaacccgggctcccaggagcgccaggctttccaggcacttcaggacatcct
gggaagagaggtccaagaggcgagataggtccccccgcatcagctggcaagagaggcctg
cctgggctgaaaggccttccgggatctcctggcctaattggcttcctggggaaccccggc
tcgccaggggccactgggttgccaggcctgccaggtccgaagggtgagaaggggtctgtt
gggctgataggttttccagggattccaggtctccctggtattcctggtgcaagcggatta
aagggaattcctggatcagccggaagagtgggaccttctggacaggctggcagccctggt
gaaaaaggagacagaggcgacccagggccagtgggaatccccagtccaagaccgccaatg
ctgaatgtccttttcaaaggagacagaggctctcagggctcagctggatccatcggattt
cccgggcccagaggtgacaagggagaagctggcttccccgggccaccaggcttgcctgga
gctcctggcttgcccagcatcatcaagggacttagtgggataccaggccctcctggttcc
acgggactgcggggcttacccggcctgaaggggtcccctggaatcacagggnttccagga
gtaccaggacaaagtggctcacagggtctcagtggagctcctgggctcccaggagcatct
ggtctcccaggtttaaaaggagatcaaggccagacacttggaatttctggtagcccagga
cccaagggacaacctggagagtctggtttcaaaggtgtgaaaggaaaagatggacccgtt
ggtgatgtgggtttcccaggaaacaaaggggaagatgggaatgctggtattcctggagct
gttggccttcctggctccccaggactccccggggtcgcaggcatgaggggaaatccaggg
cttccaggttctccaggccacccaggggcatctgggcccctgggaccccctggcctcgta
ggaaccaaaggtttccctggacttcctggtttacatggactaaacgggcttccaggaacc
aaagggactcatggaactccaggacctagcataactggtgtgcctgggccagctggcctg
cctggtcccaaaggagagaaaggctctccaggagttggcattggagccccaggaaatcca
ggcgtgagagggcaaaagggtagccgaggtttcccaggtcttcagggccccgctggtctc
cccggtcccccaggccactccttgccttcagtcatagcaggacagcctggtgaccccggg
cgaccaggcctagatggagaacgaggccgcccaggccccccggggcccctaggtcccccg
gggccatcctcggatcaaggcgaccctggagaccctggcttccctggaattcctggtcct
cgagggcccaagggagaccaaggaatcccaggtttctctggcctcccaggagcattggga
ctgaaaggcatgaaaggggagcctggattcatggggattccaggcaaggttgggccatcc
ggagacccaggatttcccgggatgaaggggaaagcagggccaagaggtctttccggccct
cgaggtgctcctggccaaacaccaattgcagaagctatccgggctcctcctggacccatg
ggtcttccaggcattgatggtattcccggcctcacgggggaccctggggcccaaggccct
ataggcctacaaggtaccaaaggtttacctggcatccctggcaaagatggccccactggt
ctccccggcccacctggggctcttggtgatcctggtctccctggactgcaaggccctcca
ggatatgaaggagctccagggaagcagggcccctttgggacggctggattgcccgggcag
agcgtgagagtgggctacaccttggtgaaacacagccagtcggaacaggtgcccctgtgt
cccatcgggatgagccagctctgggtgggttacagcctgctgtttgtggaggggcaggag
aaagcccacaaccaggatctggggtttgctggctcctgcctgccccgcttcagcaccatg
cccttcatctactgcaacatcaacgaagtgtgccactatgcccggcgcaacgataaatcc
tactggctctccactaccgcccccatccccatgatgcccgtcggccagtcgcagattccc
cagtatatcagccgctgctctgtgtgtgaggcaccctcccaagctattgccgtgcacagc
caggacatcaccatcccgcagtgccccctgggctggcgcagcctctggatcggctactcc
ttcctcatgcacacagccgctggtgctgagggtgggggccagtccctagtgtcccccggc
tcctgcctcgaggactttcgggccacacccttcatcgagtgcagtggtgcccgaggcacc
tgccactactttgccaacaagtacagtttctggctgacgacggtggaggagcggcagcag
tttggggaggagccggtctctgagacgctgaaagccgggcagctccacacccgggtcagc
cgctgccaggtgtgtatgaaaagcgtgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (11)   
   KEGG PATHWAY (11)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (66)   

Download RDF
DBGET integrated database retrieval system