KEGG   Sus scrofa (pig): 106504057
Entry
106504057         CDS       T01009                                 
Symbol
ERCC6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA excision repair protein ERCC-6
  KO
K10841  DNA excision repair protein ERCC-6
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    106504057 (ERCC6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ssc03036]
    106504057 (ERCC6)
   03400 DNA repair and recombination proteins [BR:ssc03400]
    106504057 (ERCC6)
Chromosome and associated proteins [BR:ssc03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    106504057 (ERCC6)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Other TCR factor
      106504057 (ERCC6)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII DEAD HDA2-3
Other DBs
NCBI-GeneID: 106504057
NCBI-ProteinID: XP_020929362
Ensembl: ENSSSCG00000010391
Position
14:complement(89998125..90075911)
AA seq 1497 aa
MPNEGIPHSSRTQEQDCLQSQDVSESEEATIKQENGVGVELGESLLSSSADGPSCSAEGC
PAEVPRRGPALLHIDRHQIQAVEPSAQALELQGLGVDVYDQDVLEQGVLRQVDSAIQEAS
RTAQLADAEKEYRSVLDDLTSCTTSLRQIDKIIEQLSPQAATNRDINRKLDSVKRQKYNK
EQQLKKITAKRKRLQAILGGAEVQVEIDHASLEEEEDAENDSKFLTRSDTGSWCTSGPSC
LGSMLMPVQEAAWEELVRTGQMTPFGTQIPQKQEKKPRKLMLNEASGFEKYLADQAKLSF
ERKKQACNKRAARKALASVTSEPSSTRSENKPDKKGTVLLKKDKRLEKRIRKLQKKALQF
QGQVGLPKGKRHLEYDMRPEAEGASEGEESEYLPSEEEPQEAAGADLSEDERRRVLSHRK
RQKKVTVQDIDDDFFPSSGEEAEGTGGGGGGRKVARCRDDGDEDYYKQRLRRWNKLRLQD
KEKCLKLEDDSEESDAEFDEGFKMPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMG
LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVA
ILHETGSFTHKKEKLVRDIAHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPN
AAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGG
YSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKV
YQNFIDSKEVYRILNGEMQIFSGLVALRKICNHPDLFSGGPKNFKGIPGEELEEDQFGYW
KRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQ
PLITRYNEDASIFVFLLTTRVGGLGVNXTGANRVIIYDPDWNPSTDTQARERAWRIGQKK
QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDTSQS
TETSAIFAGTGSDVQTPKRHLKRKFHPVLGTDQNVAMGKKLPDLNASANDATPSEEKSIA
MGAEINAATSNQEDPLKDAPQTPRSLTSSDRLGGETDAESRLQESSGIRGNGECSDSTGV
GKMCRTPGEDSIEEEEGLSDKRESCQVQTEPLWENGQTDTSFQKHKSKTKHRVTEEETLE
KHLRPKQKPKNSKHRRDAKFEGTRIPHLVKKRQYQRQDNENESEVKERSNDDYVLEKLFK
KSVGVHSVMKHDAIMDGASPDYMLVEAEANRVAQDALKALRLSRQRCLGAASGVPTWTGH
RGLAGAPAGRKSRFGQKRNSNFAVQHPSSASPKEKSQDGILKKDGKDSVSEHFSGKVEDA
ELSSGALTSSSLLAKMRARNHLILPARLESESGHVPEASAPLPSSTEHDELLVEMRNFIA
FQAQVDGQAGTREILQEFEPRLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEYC
NT seq 4494 nt   +upstreamnt  +downstreamnt
atgccaaatgaaggaatcccccactcaagtcgaactcaggagcaagactgtttacagagt
caggatgtcagtgagagtgaagaagcgacaatcaagcaggaaaatggtgtcggtgtggag
ctgggggagagcctcctctcttcttctgctgacggaccatcctgttccgctgaggggtgc
cctgcagaagttccgaggagagggccagccctcctgcacatcgatagacatcagatccag
gcagtggagcccagcgcacaggctctggagctgcagggattgggtgtggacgtctacgac
caggacgtgctggagcaaggtgtgcttcggcaggtggacagcgccatccaggaggccagc
cgcacagcccagcttgctgacgcggagaaggagtatcgatcagtcctggacgacctcacg
tcatgtacaacatccttaaggcaaattgataaaattatcgaacaacttagccctcaagct
gctaccaacagagacatcaacaggaaacttgattctgtaaaacgacagaaatacaacaag
gaacaacagctcaagaagatcacagcaaaacggaaacgtctccaggccatccttggagga
gcagaggtacaagttgaaatagatcatgccagtctggaggaggaggaggatgcagaaaat
gatagtaaatttttaactcggtccgatacaggctcctggtgcacaagcgggccgtcctgc
cttggcagcatgctcatgcctgtgcaggaggccgcttgggaagagctcgtccgcactggc
cagatgacaccttttggtacccagatccctcagaagcaggagaaaaagcccagaaaactg
atgctcaatgaagcatcaggctttgaaaagtatttggcagatcaagcaaaactgtctttt
gaaagaaagaagcaagcctgtaataaaagagcagctagaaaagctctggcctcagtcact
tctgagcccagctcaacacgcagtgaaaacaaaccggacaagaaaggcacagttctcttg
aaaaaagataagcgcttggagaagcgcataaggaaactccagaagaaggcccttcagttc
caggggcaagtgggactgccaaagggaaagagacacttggagtatgacatgcggcccgag
gcagagggagcctctgagggtgaagagtcggagtacttgccctcggaggaggagccacag
gaggcggcgggggccgacctctccgaggatgaacggaggcgggtgctcagtcaccggaaa
cggcagaagaaagtcacagtgcaggacattgatgatgacttttttccaagttctggggaa
gaagctgaaggcacaggagggggcggaggaggtcggaaagtagcaagatgccgagacgat
ggagatgaagattattataaacagcggttaaggagatggaataaactgaggctgcaggac
aaagagaaatgtttgaagcttgaagacgattctgaggaaagcgatgctgaatttgatgaa
ggttttaaaatgccgggttttctgttcaaaaagctttttaagtaccagcagacaggtgtt
aggtggctgtgggaattgcactgccagcaggcaggaggaattctgggagacgaaatggga
ttgggcaagaccatccagataattgccttcttggcaggtctgagctacagcaagatcagg
actcgtggttcaaattacaggttcgagggattgggcccaactataatcgtttgtccaacg
acagtgatgcatcagtgggtgaaggaatttcacacgtggtggcctccattcagagtggca
attctgcacgaaactggttcctttacccacaaaaaggagaaactagttcgagatattgct
cattgccatggcattttgatcacttcttactcctacattcgactgatgcaagatgatatt
agcaggcatgactggcactacgtgatcctggatgaaggacacaaaatccgaaatccaaat
gctgccatcacccttgcttgcaaacagttccgcacccctcatcgcatcatcttgtctggc
tcaccgatgcagaataacctccgcgagctgtggtcgctctttgacttcatcttcccagga
aagctgggcacgttgcccgtgttcatggagcaattctcagtccccatcaccatgggaggc
tattccaacgcttccccggtacaggttaaaactgcttataagtgtgcatgtgtcctacga
gacaccataaatccataccttctgcggagaatgaagtcagatgtcaaaatgagcctttct
ttgccagataaaaatgaacaggtcttattttgccgtcttacagatgagcaacataaagtc
taccaaaatttcattgattccaaagaagtttacagaattctcaatggagagatgcagatt
ttctctggacttgtagccctaagaaaaatctgcaaccaccctgatctcttttctggaggc
cccaagaactttaaaggtattccaggcgaggaactagaggaagatcagtttggatactgg
aaacgttctgggaaaatgatagttgttgagtccttgttgaaaatatggcacaagcagggc
caacgagtattgctattttctcagtccagacagatgttggacatacttgaagtattcctt
agagcccaaaagtattcctatctcaagatggatggtaccactacaatagcttcacgacaa
cctctgatcacaagatacaatgaggacgcatccatatttgtgtttcttctgaccactcgg
gtgggtggcctaggagtcaacntgacgggggcaaacagagtcatcatctatgaccccgac
tggaacccaagcacagacacacaggcccgggagcgagcatggaggataggccagaagaag
caggtgacggtgtacaggcttctcactgcgggcaccattgaagaaaagatttaccaccga
caaatcttcaagcagtttttgacaaatagagtgctaaaagatccaaaacaaaggcgattt
ttcaagtccaatgatctttatgagctgtttactctgaccagtcctgatacatcccagagc
actgaaacaagtgctatttttgcagggactgggtcagatgttcagacacccaaacgccat
ttaaaaagaaaatttcaccccgtccttggaacagaccagaacgttgcaatgggcaaaaag
ctccctgatttgaacgcatctgcaaatgatgccacgccatctgaagagaaatctatagct
atgggagctgaaataaatgcagcaacttctaatcaagaggatcctttgaaagatgcccct
cagacacctcgtagtctaaccagcagtgacagacttggaggagagacagatgcggagtcc
agactacaggagtcctcagggattcgaggaaatggggagtgttcagactctacaggagtc
ggcaaaatgtgcaggactcctggtgaggacagcatcgaagaagaggagggtctttctgat
aaaagagaaagctgccaggttcaaacagaacccctttgggagaatggacaaacggacact
agttttcagaaacacaagtcaaaaacaaaacaccgtgtgacggaagaagagaccctggag
aaacacctgaggccaaagcaaaagcctaagaactccaagcaccgcagagacgccaagttt
gagggaacccgaattccacacctagtgaagaagaggcagtaccagaggcaagacaatgaa
aatgagagcgaggtcaaggaacgcagcaatgacgactatgttctggaaaagcttttcaaa
aagtcagtgggcgtgcacagcgtcatgaagcatgatgccatcatggacggagccagtcca
gactacatgctggtggaggcggaggccaaccgcgtggcccaggatgcccttaaagcactg
agactctcgaggcagcggtgtctgggagcggcgtctggtgttcccacctggaccggtcac
agggggcttgctggtgccccagcaggaagaaagagtagatttggtcagaaaaggaactcc
aacttcgctgtgcagcatccttcttcagcatctccaaaggagaaaagccaggacggcatt
ctgaaaaaggatggaaaagacagtgtttctgagcattttagtggaaaagtggaagatgca
gaactttcatccggggccctcacttcctcctcactgttggcgaaaatgagagcaagaaac
cacctgattttgccagcgcgcttagaaagtgagagtgggcacgttccagaggcctctgcc
ccgctgccctccagcacggaacacgatgagctcctggtagaaatgaggaacttcattgcc
tttcaggcccaagtcgacggccaggccggcactcgggagatactgcaggagttcgaaccc
aggttatcggcatcacagtcttgtgtctttcgagaactgttgagaaatctgtgcactttt
catagaacttctggtggggagggaatttggaaactcaagccagaatattgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (39)   

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