KEGG   Sus scrofa (pig): 110261332
Entry
110261332         CDS       T01009                                 
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta isoform X1
  KO
K08882  tripartite motif-containing protein 28 [EC:2.3.2.27]
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:ssc01001]
    110261332 (TRIM28)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssc04121]
    110261332 (TRIM28)
Enzymes [BR:ssc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110261332 (TRIM28)
Protein kinases [BR:ssc01001]
 Serine/threonine kinases: Other
  TIF1 family [OT]
   110261332 (TRIM28)
Ubiquitin system [BR:ssc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    110261332 (TRIM28)
SSDB
Motif
Pfam: zf-B_box zf-RING_5 PHD zf-RING_UBOX zf-C3HC4 zf-RING_2
Other DBs
NCBI-GeneID: 110261332
NCBI-ProteinID: XP_020953003
Position
6:63094382..63101532
AA seq 861 aa
MAASAAAASAAAAAASGSPSPGEGSAGAEKRAAASSAAASASASASASASSPAGGGGEAL
ELLEHCGVCRERLRPEREPRLLPCLHSACSACLGPAAPAAANSSGDGGAAGDGAVVDCPV
CKQQCFSKDIVENYFMRDSGSKAATDSQDANQCCTSCEDNAPATSYCVECSEPLCETCVE
AHQRVKYTKDHTVRSTGPAKSRDGERTVYCSVHKHEPLVLFCESCDTLTCRDCQLNAHKD
HQYQFLEDAVRNQRKLLASLVKRLGDKHATLQKNTKEVRSSIRQVSDVQKRVQVDVKMAI
LQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNT
ALLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNSTG
PAPMAPPRAPGPLSKQTSGSSQPMEVQEGYGFGSDDPYSSAEPHVSGVKRSRSGDGEVSG
LMRKVPRVSLERLDLDLTADSQPPVFKVFPGSTTEDYNLIVIERGAAAAAAGQPGTAAPG
APGAPPLPGMAIVKEEETEAAIGAPPAATEGQETKPVLMALAEGPGAEGPRLASPSGSTS
SGLEVVAPEGTSAPAGGPGALDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVP
GCEATWGLQGGGLGWVLCSPSFSVPPREEWSCSLCHVLPDLKEEDGSLNLDGGDSTGVVA
KLSPANQQKCERVLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKLSPP
YSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMNEAFGDTKFSAVLVEPPP
LSLPGAGLSAQDLSSGPGDGP
NT seq 2586 nt   +upstreamnt  +downstreamnt
atggcggcttcggcggcggcagcctcggccgcggcggcggccgcctccggcagcccgagc
ccgggcgagggctcggcaggcgccgagaagcgcgccgccgcctcctcggccgcggcctcg
gcgtctgcctcggcgtcggcgtcagcatcgtcgcccgcggggggcggcggcgaggcgctg
gagctgctggagcactgcggcgtgtgccgggagcgcctgcggcccgagagggaaccgcgt
ctgctaccctgcctgcactctgcctgcagcgcctgcctcgggcccgcggcgccagccgcc
gccaacagttctggggacggaggcgcggcgggcgacggtgctgtggtggactgtccagtg
tgtaagcaacaatgtttctccaaagacattgtggagaattattttatgcgcgacagtggc
agcaaggctgccaccgactcccaggatgctaatcagtgctgcactagctgtgaggataat
gccccagccaccagttactgtgtggagtgctctgagccgttatgtgagacgtgcgtggag
gcgcaccagcgggtgaagtacaccaaggaccacaccgtgcgctccactggaccagccaag
tcgagggacggtgagcgcacggtatactgcagcgtgcacaagcacgagcccctcgtgctg
ttctgcgagagctgcgacaccctcacctgccgggactgccagctcaacgcccacaaggac
caccagtaccagttcctggaggatgcagtgaggaaccagcgaaagctcctggcctcactg
gtgaagcgcctcggggacaagcatgcgacgttgcagaagaacaccaaggaggttcgcagc
tcgatccgccaggtgtctgatgtgcagaagcgcgtgcaggtggatgtcaagatggccatc
ctgcagatcatgaaggagctgaacaagcggggccgcgtgctggtcaacgacgcccagaag
gtgactgagggccagcaggagcgcctggagcgccagcactggaccatgactaagatccag
aaacaccaggaacacattctgcgctttgcctcctgggctctggagagtgacaacaacaca
gccctgctcctctccaaaaagctgatctacttccagctgcaccgggccctcaagatgatt
gtggaccctgtggagccacatggcgagatgaagttccagtgggatctcaatgcctggacc
aagagtgcagaggccttcggcaagatcgtggcagaacgtcctggcaccaactccactggc
cctgcacccatggcccctcctcgggctccaggacctttgagcaagcagacctctggcagc
agccagcccatggaggtgcaggaaggctatggctttggatcagacgacccctactcgagt
gccgagccccacgtgtccggggtaaagcggtcccgctcaggtgacggcgaggtgagcggc
ctcatgcgcaaggtgccacgggtgagcctcgaacgcctggacttggatctcaccgctgac
agccagccgccagtcttcaaggtcttcccaggcagcaccacggaggactacaacctcatt
gtcatcgagcgaggcgctgcagctgctgctgctggacaacctgggactgcagcccctggg
gctcctggggccccgcccctgcctggcatggccatcgtcaaggaggaagaaacagaggct
gccattggcgctccgcctgctgccactgagggccaggagaccaagcctgtgctgatggcc
ctggcggagggccctggtgccgagggcccccgcctggcctcacccagtggcagcaccagc
tcaggcttggaggtggtggctccagagggcacctcagccccagcgggtggcccaggtgcc
ctggatgacagtgccaccatctgccgtgtctgccagaaaccaggtgacctggtcatgtgc
aaccagtgcgagttctgcttccacctggattgccacctgcctgccctgcaggatgtgcca
gggtgcgaggctacgtggggtctgcagggtggagggctgggctgggtcctttgcagcccc
tcattctctgttccccccagggaggagtggagctgctcgctctgccatgtgctccctgac
ctgaaggaggaggatggcagcctgaaccttgacggtggagacagcactggcgtggtggcc
aagctctcgccagccaaccaacagaagtgtgagcgcgtcctcctggccctcttctgccat
gagccctgtaggcccctgcaccaactggctaccgactccacattctctctggatcagcct
ggcggcaccctggacttgaccctgatccgagcccgtctccaggagaagttgtcacctccc
tacagctccccccaggagtttgcccaggacgtgggccgcatgttcaagcagttcaacaag
ctgacggaggataaggccgacgtgcagtccatcattggcctgcagcgcttctttgagact
cgcatgaacgaggcctttggtgacaccaagttctctgctgtgctggtggagcctccgcca
ctgagcctgccgggtgctggcctgagtgcccaggacctatccagtggccccggtgatggc
ccctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (49)   

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