KEGG   Sus scrofa (pig): 414403
Entry
414403            CDS       T01009                                 
Symbol
POLR2I
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9 isoform 1
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03020  RNA polymerase
ssc03420  Nucleotide excision repair
ssc05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    414403 (POLR2I)
  09124 Replication and repair
   03420 Nucleotide excision repair
    414403 (POLR2I)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    414403 (POLR2I)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssc03021]
    414403 (POLR2I)
   03400 DNA repair and recombination proteins [BR:ssc03400]
    414403 (POLR2I)
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     414403 (POLR2I)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      414403 (POLR2I)
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C Zn_ribbon_recom Ogr_Delta DZR
Other DBs
NCBI-GeneID: 414403
NCBI-ProteinID: NP_001192333
Ensembl: ENSSSCG00000002925
UniProt: P60899 A0A480LGI2
Structure
Position
6:complement(45480785..45482318)
AA seq 125 aa
MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
HRWTE
NT seq 378 nt   +upstreamnt  +downstreamnt
atggaaccggacgggacctacgagccaggcttcgtgggtattcgattctgccaggaatgc
aacaacatgctttaccccaaggaagacaaggagaaccgcattctgctttacgcgtgccgg
aattgtgattaccagcaggaggctgacaacagctgcatctacgtcaacaaaatcacacac
gaagtggacgaactaacccagatcatcgctgacgtgtcccaggaccccacgttgccgcgg
actgaagaccacccatgccaaaagtgcggccacaaggaggcggtgttcttccagtcacac
agtgcccgggccgaggacgccatgcgcttgtactacgtgtgcacggccccacactgcggc
caccgctggaccgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (14)   
   RefSeq(nuc) (2)   
   GenBank (6)   
   EMBL (6)   
3D Structure (73)   
   PDB (73)   
Protein domain (5)   
   Pfam (5)   
All databases (116)   

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