KEGG   Staphylococcus schleiferi 1360-13: LH95_05670
Entry
LH95_05670        CDS       T04012                                 
Name
(GenBank) RecD/TraA family helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ssch  Staphylococcus schleiferi 1360-13
Pathway
ssch03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ssch00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LH95_05670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssch03400]
    LH95_05670
Enzymes [BR:ssch01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LH95_05670
DNA repair and recombination proteins [BR:ssch03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LH95_05670
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_4 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 nSTAND3 Rad17 T2SSE AAA_14 AAA Mg_chelatase AAA_22 UvrD-helicase Zeta_toxin HHH_5 AAA_18 TsaE Pro-kuma_activ AAA_28 AAA_7 AAA_29 DUF6858 NB-ARC AAA_16 Helicase_RecD HHH_3 ABC_tran AAA_17
Other DBs
NCBI-ProteinID: AKS66957
Position
1207183..1209576
AA seq 797 aa
MDNPTLFDQTYVKGTVEMILFQNNENYYTVLKVDVQESNGDFDDMVTVVGYFPNMVEDET
YLFKGSVVQHPKYGKQLKAETFQKEIPQTKDAVIAYLSSDLFKGIGKKTAELIVETIGEN
AINKILKDNQVIEKVPKLSKKKQEQIVQQIISNQESEQVMIRLNELGFGSKLAMDIYKFY
QHETLNVLDQNPYQLVYDIKGVGFQKADQLAQQLGIHPNHPDRLKAGLLFLVEETCIKQG
HTYLPQEALINETIQLLSKNEGEDVRYESIEDIMAQLTEEKKLIEVDHMIAIPSLYYSEI
KSTQNLFRVYSHNEALTQFERSDIQLHIGEIEEMNEVHYAASQKEALECAINHKVMLLTG
GPGTGKTTVIKGIVQLYSEIHGVSLDYDDYHNNDYPIVLAAPTGRASKRLHESTGLEAMT
IHRLIGWNQETKPDDILDNEINAKLIIIDEMSMVDTWLFHQFMAAVPLDAQIIFVGDEDQ
LPSVGPGQIFKDLIDSNVLPRINLTEVYRQQEGSSIIELAHKMKLGEPVDITQRFHDRSF
ISCSTEQIPDVVEKVVNNAVQKGYTMADIQVLAPMYRGNAGIKRLNQILQSILNPVHDKS
KREIEFGDVIYRKGDKVLQLINRPNDNIFNGDIGIIVGIFWAKENALNKDVVVVDYDGNE
ITYMKSDLTELTHAYCTSIHKAQGSEFPIVLMPIIKQYYRMLQKPILYTGLTRARQSLVF
LGDSEAFNMGLATEGKARLTQLYSFLTQYFNNETDENNQGDQDDLPIELTEATMFKINPM
INMGEVTPYDFLEIDKA
NT seq 2394 nt   +upstreamnt  +downstreamnt
atggataatccaacactgtttgatcaaacctatgtaaaaggaacagttgaaatgatattg
ttccaaaataacgaaaactactatacagtgctgaaagtcgatgtacaagaatcaaatggc
gacttcgatgacatggttacagtcgttggatattttcctaatatggtcgaagatgaaacg
tatctgtttaaaggaagcgttgtccaacatccaaagtatggtaaacagttaaaagccgaa
actttccagaaagaaattccccaaactaaagatgcagtaattgcatatttatcaagcgac
ttattcaaaggtattggtaaaaaaacagcagaactgattgtcgaaacaattggagaaaat
gcgattaataaaatattgaaagataatcaagtcattgaaaaggtgccaaaactttctaaa
aagaagcaagaacaaattgtgcagcaaattatctccaatcaagaaagtgaacaagtgatg
atacgcctcaatgaattaggatttggttcaaaattagcgatggatatttataaattttat
caacatgaaacgctcaatgtactagatcaaaacccctatcaattggtttacgatattaag
ggggttggttttcaaaaagcggaccaacttgcacaacagttaggtattcatccgaatcat
cctgatcgtctaaaagcaggactattattcttggttgaagaaacttgtattaaacaaggc
catacgtacttaccacaagaggcacttatcaatgagaccatacaacttctttctaaaaat
gagggtgaagacgttcgttatgaatccattgaagacatcatggcgcaattgaccgaagaa
aaaaagttaatagaagttgatcacatgattgccataccaagtctgtattattctgaaatt
aaaagtacacaaaatttattcagagtttatagtcataatgaagcactgacgcaatttgaa
cgttcggatattcaactgcatattggtgaaatagaagagatgaatgaagtccattacgct
gcctctcaaaaagaagcgttagaatgcgcaatcaatcataaagttatgttattaacaggc
ggtccaggaacagggaaaacaacggttattaaaggtattgttcaactttattcagagatt
catggtgtgtcccttgattatgatgattaccataataacgactatcctattgttttagca
gcgccaacaggtcgtgcgtcaaaacgattacatgaatcaacgggcttagaagccatgacg
atacatcgtttaataggatggaatcaagaaacgaagcctgatgatattttggataatgaa
attaatgccaaactgattattatagatgagatgtcaatggtggatacttggttattccat
caatttatggctgccgtgccgttagacgcacaaatcatttttgttggtgatgaagaccag
ttaccatccgttggtccggggcaaatttttaaagacctcatcgattcaaatgtgctacct
agaattaacttaactgaagtataccgacaacaagagggatcgagtattatagaacttgcc
cacaaaatgaaactaggtgagcctgttgatattacacagcgtttccatgaccgttctttt
atatcctgtagtaccgaacagatacctgatgtcgttgaaaaggttgtaaataatgcagtc
caaaaaggatatacgatggctgacattcaagttttagcacctatgtatagagggaacgct
ggtattaaaagattaaatcagatattacaatccattcttaatccagttcacgataagtct
aaacgagaaatcgaatttggcgatgtgatttatcgtaaaggtgataaagtactgcaactc
atcaatagaccgaacgacaatatttttaatggtgatattggtattattgtcggcatattt
tgggcgaaagaaaacgcccttaacaaagatgtcgttgtagtagattatgatggtaatgaa
atcacatatatgaaatctgatttaacggaactcacacatgcttattgtacctctattcat
aaagcgcaaggttcagaatttccaattgtgcttatgccgattatcaagcagtattatcga
atgcttcaaaagccgattctttatacggggctgacacgcgctagacaatctcttgtgttt
ttaggcgattcagaagccttcaatatggggctagctacagagggtaaggcacgtttaaca
caattatattcgtttttaacacaatattttaacaatgaaaccgatgaaaataatcaaggc
gatcaagatgacttaccaatagaattgaccgaagcaaccatgtttaaaatcaatcctatg
attaatatgggcgaagtcacaccatacgattttcttgaaattgacaaagcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (30)   
   Pfam (30)   
All databases (39)   

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