KEGG   Sporothrix schenckii: SPSK_01409
Entry
SPSK_01409        CDS       T05555                                 
Name
(RefSeq) 5'-3' exoribonuclease 2
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ssck  Sporothrix schenckii
Pathway
ssck03008  Ribosome biogenesis in eukaryotes
ssck03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssck00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    SPSK_01409
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPSK_01409
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssck03021]
    SPSK_01409
   03019 Messenger RNA biogenesis [BR:ssck03019]
    SPSK_01409
   03009 Ribosome biogenesis [BR:ssck03009]
    SPSK_01409
   03016 Transfer RNA biogenesis [BR:ssck03016]
    SPSK_01409
Transcription machinery [BR:ssck03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SPSK_01409
Messenger RNA biogenesis [BR:ssck03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     SPSK_01409
Ribosome biogenesis [BR:ssck03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    SPSK_01409
Transfer RNA biogenesis [BR:ssck03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    SPSK_01409
SSDB
Motif
Pfam: XRN_M XRN_N Cas_Cas1 zf-CCHC_2
Other DBs
NCBI-GeneID: 27663601
NCBI-ProteinID: XP_016590071
UniProt: A0A0F2MEW8
Position
Unknown
AA seq 1044 aa
MGIPAAFRWLSSKYPKIISPVVEETPKEMDDGVVIPVDTTGPNPNGDEFDNLYLDMNGIV
HPCSHPEDRPPPADEEEMMLEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF
RSAQEAKEKEEDKEELLKLLKQQNGGSLSEASLEVVSKKAFDSNSITPGTPFMDILAASL
RYWCAYKLNTDPGWSKMKIIISDASVPGEGEHKIMDFVRAQRASPNHDPNTRHVIYGLDA
DLIMLSLATHEPYFRVLREDVFFQDSKARLCKLCGQKGHEASACRGQAKEKDGEFDEKDT
SHTQKPFIWLHVSVLREYLAVELDVPNLPFRWDLERAIDDWIFLCCFVGNDFLPHLPALE
IRENGINTLTALWKENLPLMNGYITKDGHVDLRRAQVIMSGLAKQEDSIFRRRKQQEDRR
EENNKRRKLHQEQGKNRNDTRNTARSLGGDSVFAEGTAGLNLRPIATFTPETSKTITHDV
VVNGRPATDANVANKSAASVLKSRMQNRTAQTTTNTNDTAASTNEKDADQRTALGKRKAD
DIEDSVKSTPQSSETSTPATKLPVEGSVDTVRMWEEGYADRYYEQKFQVDPKDIEFRHGV
ARAYVEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFVDLSRLELHFEKGRISKPFEQLM
SVLPAASRHAIPEVFHDLMLNEDSEIIDFYPEEFDLDLNGKKFAWQGVALLPFIDMARLL
AAIEKRYPLLSPADKIRNGIGKIVMLLSDADTALYDEVTSNFYSKRQGPLKYKLDPLVSG
GIAGNIEKIDDYIPHGSLTYPLERKALPDIEYDRSLSVNFELLSTPHEHKSMLLRGVKLP
TPVINRGDKEALLNNRSGRNHGGGPHNSYHSNSNNGRPWHDSGGRHQHNNYGGHQNGRDH
PPYHPGNGQSGRGSYHGASYQSWAPPVPGQAGFGSGRPPPPPSSTPMNFGRYNDGDYNNG
GYSGRGGRYVGGYDNGGYGGGSYGNDSHNQGYQNRYDLPPPPGSYNQQSYGQQSYRPPPG
RGQRPRASDNRSEGYSNSRGGYRR
NT seq 3135 nt   +upstreamnt  +downstreamnt
atgggtatcccggctgcgttccgatggctctcgagcaaatacccgaagatcatctccccg
gtggtagaagaaacaccgaaagaaatggacgacggtgtcgtcatacccgtcgatacaacg
gggccgaacccgaacggggatgaattcgacaacctgtatttggacatgaacggcatcgtg
cacccttgctctcatccggaagaccgccccccgccagcagatgaagaggagatgatgttg
gaaattttcaaatacacagaccgggtcgtcaatatggtccggccccgcaagttgttgatg
attgccgtcgacggtgttgcacctcgcgccaagatgaatcagcagcgctcgcgtcgtttt
cggtccgcccaggaggcaaaggaaaaggaagaggacaaggaggagcttttgaaactactg
aaacagcaaaacggtggtagcctgtctgaagcgtctctcgaagtcgtgtcaaaaaaggcg
ttcgactcgaactctatcacaccgggtacccctttcatggacattttggctgccagccta
cgatactggtgcgcctacaagctgaacacagatccgggttggtccaagatgaaaatcatc
atctcggatgcaagcgtgccaggtgagggtgagcacaaaattatggactttgttcgcgct
caacgggcgtcacccaaccacgatccaaatactcgtcatgtcatctatgggttggatgcg
gatctcatcatgctaagtctcgccacacatgagccgtactttcgagttttacgggaggac
gtatttttccaggacagcaaggcgcgtctttgcaaactttgtggacaaaagggccatgaa
gcaagcgcatgcaggggccaggcgaaggaaaaagatggcgagtttgacgaaaaagacacc
tcacacactcagaagccattcatctggcttcatgtatctgttttgcgagaatatctcgct
gtcgaacttgatgttcccaatcttcctttccgatgggatttggagcgtgccattgacgac
tggattttcttgtgctgtttcgtgggcaatgatttccttcctcatcttcctgcgcttgaa
atccgcgagaacggcattaatacactgacggcgctttggaaagagaacttaccgctcatg
aacggctatattacaaaagacgggcatgtcgatttgagacgcgctcaagtcatcatgagc
ggacttgccaaacaggaggacagtattttccggcgcagaaaacaacaagaagatcgaaga
gaagaaaacaacaaacgacgcaaacttcaccaagaacaagggaagaaccgcaacgacact
cgtaacactgcccgaagcttggggggtgatagtgtctttgcagagggcaccgccggcttg
aatttgcgccctattgctactttcacacccgaaacctcaaagactattactcacgacgtg
gtcgtgaacggtagaccagcaaccgatgcgaacgtagcgaacaaaagcgccgccagcgtt
ctgaagagccgcatgcaaaatcgtaccgcgcaaactacgaccaatacaaacgataccgcc
gcatctacaaatgagaaagacgcagatcaacggaccgcccttggtaaacgcaaggccgat
gacattgaagatagcgtcaagagcactccacaatccagtgagacgagtacgccggccacg
aagctgcctgtggaagggtctgtggatactgttcggatgtgggaagaaggatatgcagac
cgttactacgaacagaagtttcaggtcgacccaaaagacatcgagttccgccacggtgtt
gctcgcgcctatgtggaaggcctagcctgggttcttttgtactatttccagggatgcccg
tcttgggaatggtactatccctatcattacgcaccattcgctgccgactttgtggatctg
tccaggctggagcttcacttcgagaagggccgcatctcgaaaccattcgagcaactcatg
agcgttcttccagcagcctctcgccatgccatccctgaagtttttcacgacctcatgctg
aacgaagacagcgaaatcatcgatttctatccagaagaattcgacctcgatctcaatggc
aaaaagtttgcatggcagggggtagcactactacctttcattgacatggcacgtttactt
gctgccatagaaaaacggtacccgcttctaagtcctgcagacaaaatccgtaacggtatt
ggcaagattgttatgctgctgtctgacgcagacacggcgttatacgacgaggtgacttca
aatttctactcgaaacgacaaggaccactcaagtacaagctggatcctctggtatctggc
ggaatcgccggaaacatcgagaaaatagatgattatatcccacacggctcattgacctac
ccgttggagcgaaaggcccttcccgacattgaatatgacagatctttaagtgtcaacttt
gaactgctgtccacgccacacgagcacaagtccatgctcctacgcggggttaagcttcca
acgcccgttatcaaccgcggcgacaaggaggcattgctcaacaataggtctggccgtaat
catggaggcgggccgcacaatagctaccatagcaatagcaacaatggccggccgtggcat
gattcgggcggaagacaccagcacaacaattatggcggccaccagaacggtcgtgatcac
ccaccgtatcacccggggaacggccagagcggacgaggctcatatcatggagcgtcatat
caatcttgggcccccccagtacccggccaagccgggtttggttctggtcggccccctcca
ccgccttcatcaacccctatgaactttgggaggtacaatgacggtgattacaataatggt
ggctacagtggtcgtggaggcagatatgtgggtggttacgacaatggaggttacggcggc
ggtagttacggtaacgacagccacaaccaaggttaccaaaatcgctacgacttaccccca
ccacctggaagctacaatcagcagtcctatgggcagcagtcatatcgccctcctcctggc
cggggccaacggccaagggcgagtgacaaccgctccgagggttacagcaactctcgcggc
ggctaccgtaggtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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