KEGG   Sporothrix schenckii: SPSK_04815
Entry
SPSK_04815        CDS       T05555                                 
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ssck  Sporothrix schenckii
Pathway
ssck03008  Ribosome biogenesis in eukaryotes
ssck03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssck00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    SPSK_04815
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPSK_04815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssck03019]
    SPSK_04815
   03009 Ribosome biogenesis [BR:ssck03009]
    SPSK_04815
   03016 Transfer RNA biogenesis [BR:ssck03016]
    SPSK_04815
   03036 Chromosome and associated proteins [BR:ssck03036]
    SPSK_04815
Messenger RNA biogenesis [BR:ssck03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     SPSK_04815
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     SPSK_04815
Ribosome biogenesis [BR:ssck03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    SPSK_04815
Transfer RNA biogenesis [BR:ssck03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    SPSK_04815
Chromosome and associated proteins [BR:ssck03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    SPSK_04815
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12
Other DBs
NCBI-GeneID: 27666855
NCBI-ProteinID: XP_016583801
UniProt: A0A0F2LX99
Position
Unknown
AA seq 1492 aa
MGVPKFFRWLSERYPAISQLIAENRIPEFDCLYLDMNGIIHNCTHSDSDDAMTRLSEEEM
FIRIFNYIEHLFGKIKPKQMFFMAIDGVAPRAKMNQQRSRRFRTALDAENMRKKAIAEGQ
QMPTEDPFDSNCITPGTAFMAKLSTQLKYFVNKKVSEDKEWQQCKVVLSGHDVPGEGEHK
IMEYIRNAKAQKDYNHNMRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQNKTKSKE
LEHQNFYLMHLCIVREYLELEFQELKTEGLMKFPFNLERIIDDFILMAFFVGNDFLPNLP
RLHINEGALATMFTLYKRVLPQCEGYINEGGSVNVERLGKLLAELSKEEFRFFEHEIEGE
KWYQAKLMSHAPAGEGLTIAVDKKKRGGRNHGSSTNGTPNSSNTNSFAPTPTPQSAAAAA
AAANKGKIQLSNFQKELWKSKIRKFVSKPTATPLDLGADLKADDRKFVQDLADSLRIDWR
TDEDGEGNRRLVLSFPADRVSNKNGQNEDDEEEEEAQLALFRVMKKYDTADVVDVFAGES
QEALDKLYMLKFQQWKDAYYKDKFHWSDAELSSEVRKICENYVQGLQWVLFYYYRGIASW
PWFYQYHYSPLISDVIKGLGADLNFKLGQPFRPFEQLMGVLPDRSKSIVPTVYWGLMTDE
NSPIIDFYPRDFELDMNGKKMEWEAVVKIPFIDERRLLDAMAPKNDLLSEEEKARNEFGV
PIEFAFQPDTDFVYLSPLTGIFPDVTHCRCVMNIFDLPPTEGLEYLHDLTDGALLNASAL
AGFPSLHTLPYHASLGFHAVNVFQQDSRNASMVVTLSDSEARTNIEAAKRKLGQRCHVGY
PFLQEAKVVRVSDELFSYTLDDKGAVVQTPHGGRELDRWSSKARSIEEFYSKRLAILTGT
VESLVHVHMLKGLIKTDDGATIKEYGEVLSMETDFATQVIVDAVVNEDERFIERAAVPIS
EEFPVGSHAFYLGDYAYGRPLGVVGHKGNRMDVMVSVLKDKENDFAHGIVAHADRTHRYT
PSYAVAKSLDLHPLSLSKITSSFFVFSVGNLKVNLGLNLKFEAKKQKVLGFSRKSGTGWE
FSTPAIQLIANYMVAFPDFFAGLKHLPQNRDIKDTDIWPDQALASKRVKEIGAWLKTQET
SKLERVPLDAEQLDSDIVGQIAAAADNSSAATAPTETKPIKNVPRNAVLKPADAEQRLGN
QNFALGDRVVYVQDSGKVPIALRGTVVGISRTPTTKLLDVVFDTTFMSGTTLGERCPPFR
GQMVTASSVLNLSNRQVVAGSRAAIERKPNASLTTLTTPTTGSGGSGGQQNGPNGQGFRQ
YRDAAPPAPLRGSFRGALNGSNNGRGRGNGGQQQQSRPGPRPGTALEHSSLVYRPGGQGQ
GQAQQPQQQQANGRGGRGGRGGRGGRGGTSHGNGDGQQQGAAAVAAAQSFNAVPPPANLE
AHRGGRGRGRGRGRGGRGNAAGGRGGNNAGQQPTKNGGGNSSNAAAPAPSAA
NT seq 4479 nt   +upstreamnt  +downstreamnt
atgggtgtccccaagttcttccgatggctctcggagcggtatccggccatctcacagctg
attgccgagaaccgcatccccgagttcgactgcctctacctcgacatgaacggcatcatc
cacaactgcacccacagcgactcggacgacgcgatgacccgcttgagcgaagaagaaatg
tttatacgcatcttcaattacatagagcacctgtttggcaaaatcaagcccaagcagatg
ttcttcatggccatcgacggcgtggcaccccgcgccaagatgaaccagcagcgctcgcgt
cgtttccgcacggccctcgacgccgagaacatgcgcaaaaaggccattgccgagggccag
cagatgcctaccgaagacccctttgacagcaactgcatcaccccgggcactgcctttatg
gccaagctgtccacccagctcaagtactttgtcaacaagaaagtcagcgaggacaaggag
tggcagcagtgcaaggtcgtgctgtcgggccacgacgtccctggcgagggcgagcacaag
attatggagtacatccggaacgccaaggcgcaaaaggactacaaccacaacatgcggcac
tgtctgtacggcctcgacgctgatctgatcatgctgggtctgctgagccacgacccgcac
ttctgcctcctgcgcgaggaggtcacctttggtcgccagaacaagaccaagtccaaggag
ctggagcaccagaacttttacctgatgcatctctgcattgtacgcgaatacctcgagctc
gaattccaggagctcaagactgaggggctcatgaagttccccttcaacttggagcgcatc
attgacgacttcattctcatggcattttttgtcggaaacgactttttgcccaatctgccg
cgtcttcacatcaacgagggcgctctggcaaccatgttcacattatataagcgcgtgctg
ccccagtgcgagggctacatcaacgagggcggcagcgtcaacgtggagcgcctcggcaag
ctgctcgcagagctctccaaggaggagttccgctttttcgagcacgagatcgagggcgag
aagtggtaccaggcgaagctgatgagtcacgcgccggcgggcgagggactcaccatcgcc
gtcgacaagaagaagcgcggcggccgcaaccacggcagcagcaccaacgggacgccgaac
agcagcaacaccaacagctttgcccccacgcccaccccgcagtcagccgccgccgccgcc
gctgccgccaacaagggcaagatccagctgtccaacttccagaaggagctctggaagtcc
aagatccgtaagtttgtcagcaagccgacagcaacgccactggatctaggcgccgatctc
aaggcggacgaccgcaagttcgtccaggacctggccgacagtctgagaattgactggcgg
accgacgaggatggcgagggcaaccgccgcttggtcctctctttccccgccgaccgtgtg
tccaataaaaatggacagaacgaggacgatgaggaagaggaagaggcgcagctggccctc
ttccgtgtcatgaagaaatacgacacggctgacgtcgtcgacgtctttgccggcgagagc
caggaggctctcgacaagctgtacatgctcaaattccagcagtggaaagacgcctactac
aaggacaagtttcactggtccgacgccgagctgagcagcgaggttcgcaagatctgcgaa
aactacgtccaaggcctgcaatgggtcctgttctactactaccgaggcattgcctcgtgg
ccgtggttctaccaataccactactcgcccctgatttccgacgttatcaagggcctgggc
gccgacctcaacttcaagctcggccagcccttccgcccctttgagcagctcatgggcgtg
ctgccggaccgcagcaagagcattgtgcccacagtctactggggcctgatgacagacgag
aactcgcccatcatcgatttctacccgcgcgactttgagctcgacatgaacggcaagaag
atggagtgggaggccgtcgtcaagattccctttatcgacgagcgccgattgctggacgcc
atggcgcccaagaacgaccttctctcggaagaagaaaaggcccgcaacgagtttggcgtg
cccattgagtttgccttccagccggacaccgactttgtctacctgtcgccgctgacgggc
atatttccggacgtcacgcactgccgctgcgtcatgaacatctttgacctgccgcccacg
gagggtctcgagtacctgcacgatctgacagacggcgcactgctcaatgcgtcggccctc
gcaggcttccccagtctgcacacgctgccctaccacgcgtccctcggcttccacgccgtc
aacgtgttccagcaggacagccgcaacgccagcatggtcgtcaccctgtccgactcggag
gcgcgcaccaacattgaggcggccaagcgtaaactcggccagcgttgccacgttggctac
ccgttcttgcaggaggccaaggttgtgcgcgtgtcggacgagctcttcagctacacgctc
gacgacaagggtgccgtggtgcagacaccgcacggcggccgtgagctcgaccgctggtcg
tccaaggcacgcagcatcgaggaattttacagcaagcgcctggccattctgacgggcacc
gtcgagtcgctcgtgcacgtgcacatgctcaagggcctgatcaagaccgacgacggtgcc
acgatcaaggagtacggcgaggtgctctccatggagaccgactttgccacacaggtgatt
gtcgatgccgtcgtcaatgaggacgagcgcttcattgagcgcgccgccgtgcccatctcc
gaggagttccctgtcggatcgcacgctttctacctgggcgactacgcctacggccgtcct
cttggcgtggtcggccacaagggcaaccgcatggacgtcatggtgtctgtcctcaaagac
aaggagaacgactttgcgcacggcattgttgcgcacgccgatcgcactcaccgctacacg
ccgtcgtacgcggtggccaagtccctggacctgcacccgctatcgctgagtaagatcacg
tcgtccttcttcgtgttttctgtcggaaacctcaaggtcaacctgggcctgaacctcaag
tttgaggccaagaagcaaaaggtgctgggcttctcgcgcaagtcgggcactggctgggag
tttagtaccccggccatccagctcattgccaactacatggtggcgttccccgacttcttc
gccggcctcaagcacctgccgcagaaccgcgacattaaggacacggacatctggccggac
caggcgctagcatcaaagcgcgtcaaggagattggcgcgtggctcaagacgcaggagacg
agcaagctcgagcgcgtcccgctggatgccgagcagctcgactcggacattgtgggccag
atcgccgcggctgccgacaactcatctgccgctacagcccccaccgagacgaagcctatc
aagaacgtgcctcgcaacgcggtgctgaagcccgccgacgccgagcagcggctgggcaac
cagaactttgcgctcggcgaccgcgtcgtctacgtgcaggactcgggcaaggtgcccatt
gccctgcgcggtaccgtagtgggcatcagccgcacgcccaccacaaaactgctggacgtt
gtgtttgatacaacgtttatgagcggcaccacgctcggcgagcgttgcccgccgttccgt
ggccagatggtgacggcatcgtcggttctcaacctgtctaaccgccaggtcgtcgccggc
tcgcgcgcggccattgagcgcaagccgaatgcctcgctgacgacgctgacgacaccgacg
accggctcgggtggcagtggtggtcagcagaatggcccgaacggccagggtttccggcag
taccgtgatgcagcaccgcctgcccctctgcgcgggtcgtttcgcggcgctctgaacggc
agtaacaatggccgtgggcgcggcaatggcggccaacagcagcagtcgcgcccgggaccg
cgccccggcacggccctcgaacatagcagccttgtgtaccggccgggtggacagggacaa
ggacaggcacagcagccacaacagcagcaggccaacggccgcggtggccgcggcggtcgg
ggcggccgtggtggccgtggtggcactagccacggcaacggcgacggccagcagcaaggc
gcggctgcggtggctgcagcgcagtcgttcaacgccgtgccgccgccggccaacctcgag
gcccatcgtggaggccggggtcgtggccgtggtcgtggtcgtggtggccgcggcaatgcc
gccggcggccgtggcggcaacaacgcgggccagcagccaaccaagaacggcggcggcaac
agttccaatgccgctgctcctgctccgtcagcggcgtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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