KEGG   Candidatus Profftella armatura: SSDC_01810
Entry
SSDC_01810        CDS       T02777                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ssdc  Candidatus Profftella armatura
Pathway
ssdc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SSDC_01810 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssdc03021]
    SSDC_01810 (rho)
   03019 Messenger RNA biogenesis [BR:ssdc03019]
    SSDC_01810 (rho)
Transcription machinery [BR:ssdc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SSDC_01810 (rho)
Messenger RNA biogenesis [BR:ssdc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SSDC_01810 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab OB_RNB NACHT AAA_25
Other DBs
NCBI-ProteinID: AGS07046
UniProt: S5RM63
Position
complement(433163..434320)
AA seq 385 aa
MFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTG
DFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESK
ENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPE
EVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY
NTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEE
FKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSMDEIE
AMEFFLDKMKSTKNNFEFFNMMKQG
NT seq 1158 nt   +upstreamnt  +downstreamnt
atgtttgcaatttttaaaaaaaaaacaaaaattggagaaagaatatttggtgatggttca
ttggaagttttgccagatggttttggatttttacgttcacaaggtagtaattatatggca
tcttcagatgatatatatttatcaccatctcaaatacgtcgattcaatttacataccggg
gattttgtggaaggtgaaataagagttccaaagaatggagagcgttattttgctttatta
aaaattaagaaagttaatggtgaaaaacctgaattatcaaaaaatagaactttatttgat
aatttaactccattacatccgaaaaaattattattattagagcgaaatatagaaagtaaa
gaaaatattactggaagaattattgatttaatagcgcctattggaaaaggtcaacgtggt
ttactagttgcgtcaccaaaatccggaaaatctataatattgcaacatattgctcatgca
attactactaatcattcagaagctataatgattgtaatgttaattgacgaaagacccgag
gaagtaacagaaatgcaacgttctgtaagaggagaagttattgcatcaacttttgatgag
cctgcttatcgtcatgtgcaagtagctgaaatggttttagaaaaagcgaaacgtttagtt
gagatgaaaaaagatgtaataattttattagattcaattactagattagcgcgagcttat
aatacagttattccagcatctggaaaagtacttacaggaggagtagattctaatgcatta
caaagaccaaaacgtttttttggggcagcacgaaatattgaagaaggcggttcattaact
attattgcaaccgcattaattgaaactggtagtcgaatggatgatgttatatatgaggaa
tttaaaggaacaggtaatatggaagttcatttagaacgtcgtttagcagaaaaaagagtc
tatcctgctataaatttaaataaatccggtactcgtcgtgaagaattattaattcaggat
gataaattacaaaaaatttgggtattacgaaaattgttatatagtatggatgaaattgag
gcaatggaattttttttggataaaatgaaatcaacaaaaaataactttgaattttttaat
atgatgaaacaaggctaa

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