KEGG   Shewanella sediminis: Ssed_1277
Entry
Ssed_1277         CDS       T00596                                 
Name
(GenBank) NusB antitermination factor
  KO
K03625  transcription antitermination protein NusB
Organism
sse  Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:sse00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sse03021]
    Ssed_1277
   03009 Ribosome biogenesis [BR:sse03009]
    Ssed_1277
Transcription machinery [BR:sse03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     Ssed_1277
Ribosome biogenesis [BR:sse03009]
 Prokaryotic type
  rRNA transcription factors
   Ssed_1277
SSDB
Motif
Pfam: NusB
Other DBs
NCBI-ProteinID: ABV35888
UniProt: A8FSR5
Position
1516303..1516707
AA seq 134 aa
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQKIDGIDVAYFRELLSGTATKQA
QIDEQIIPHIERPYNEVSPIEKAVLRLATYELTFRKDVPYKVAINEAIELAKAFGAEDGH
KFVNGILDKIVGRK
NT seq 405 nt   +upstreamnt  +downstreamnt
atgaagccttctgagcgccgtaaggcccgccgtttagccgttcaagccatttactcttgg
cagttaagtggaaataacattgctgatgttgagcatgaatttctaactgagcaaaagatt
gatggtatcgatgttgcctacttccgtgagctactatcgggaacagcgacaaaacaggct
caaatagacgagcaaattatccctcacattgagcgtccttataatgaggtctctccaatt
gagaaagccgtgttaagactggcgacttatgagcttacattccgtaaagatgtgccttat
aaagttgcaattaacgaagctatcgaattagctaaagcgttcggtgctgaagatggccat
aagtttgtaaacggtattctcgacaagattgtaggtcgtaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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