KEGG   Shewanella sediminis: Ssed_2904
Entry
Ssed_2904         CDS       T00596                                 
Name
(GenBank) transcriptional regulator, AraC family
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
sse  Shewanella sediminis
Pathway
sse03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sse00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Ssed_2904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sse03000]
    Ssed_2904
   03400 DNA repair and recombination proteins [BR:sse03400]
    Ssed_2904
Enzymes [BR:sse01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     Ssed_2904
Transcription factors [BR:sse03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    Ssed_2904
DNA repair and recombination proteins [BR:sse03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Ssed_2904
SSDB
Motif
Pfam: AlkA_N Ada_Zn_binding HTH_18 HTH_AraC HhH-GPD DUF6233 HTH_3 HTH_19 HTH_25
Other DBs
NCBI-ProteinID: ABV37511
UniProt: A8FXD8
Position
complement(3507757..3509265)
AA seq 502 aa
MDHHLENLSVESCRKARLSKDPRFDGQFFVGVITTGIFCRPICPAVSPQEKNVRYFDSAI
RAVNAGLRPCLRCRPDSAPDSFAWKGTQTTIERALRLIDAGVMSGDNGLSIEALSERLGI
GSRYLRQLFNKHLGTSPKQYAQFRQLMFAKQLLHQTDLPVVQVGLAAGYTSIRRFNEVFK
DTLQLTPTELRKKRSNTQPLAVNDNGSGRGLSLSLQLSYRPPLNWSHLSEFYQLRMVDGM
EWLNDLSYGRTFQLGSAKGFFEAVHHPEKNRFKVTIHLSDTQDIVQLKDIVMQIRRLLDL
DADMNKIQSSLASISLISNQIKEGLRLPGTWSAFEAGCRAILGQQVSVTQATKLLNCMVK
ANGEELSLSGRTLRMFPTPDKLAKANLDELKMPGARKAAINAFSLYVATNPDADLDEWLT
IKGIGPWTVAYAKMRGLSDPNILLCTDLIVKKKVLKMYELDRLSVDAAETGKPVNYGALT
ESLRQQATPWGSYLTFQLWNLT
NT seq 1509 nt   +upstreamnt  +downstreamnt
atggaccatcacctcgaaaacttaagcgttgaatcttgccgtaaagcgagactatcaaaa
gatccccgtttcgatggccagttttttgttggtgtgatcacgacgggaattttttgtcgg
cctatatgtcctgctgtatcgccacaagagaaaaatgtcaggtattttgactctgcaatt
cgcgccgttaatgctggattaaggccctgcctgcgctgccgccccgatagcgccccagat
tcatttgcatggaaagggacacaaacaacaatagagcgcgcgttgagattaattgatgct
ggtgttatgtctggtgataacggattgagtatagaggctctgtctgaaagattggggatc
ggtagccgatatttacgtcagttattcaataagcatttggggacatcgcctaagcaatat
gcgcaatttcgtcaacttatgtttgcaaagcaattattgcatcaaacagatctacctgtg
gttcaagtcggcttggctgcaggctacaccagcatcaggcgttttaatgaagtattcaaa
gatacattacagttaacgccaacagagctaagaaaaaagagaagtaatacacaaccactc
gcggtgaatgataatggctcaggtagaggactcagtttaagcttacaattatcatatcgg
cctccactaaattggagtcatctgtctgaattttatcaattgagaatggttgatggaatg
gagtggctgaatgacttaagctatggacgtacttttcaattaggctcagctaaaggcttt
tttgaagcagttcaccatccagaaaagaatagattcaaggtcactatccatctgtctgat
actcaagacatagtacagcttaaagatattgtcatgcagatccgcaggttattagacctc
gatgctgatatgaataagatacagagctcgctcgcatcaatctctcttataagcaaccag
ataaaagaggggctcaggttacctggtacctggtctgcattcgaagctggctgtagggcg
atattagggcagcaggtcagcgtcactcaagccactaaattgcttaattgcatggtaaag
gccaatggagaggagttgagtctgtcgggtcggacgcttcgtatgtttcctacgccagat
aagcttgcaaaagccaatttggatgagcttaagatgcctggcgcaaggaaagccgcgatc
aatgcttttagtttatatgtggccaccaacccggatgcagatcttgatgaatggttaacc
attaaagggataggtccctggaccgtagcctatgccaaaatgcgcgggttaagcgacccc
aacattttgttatgtaccgatctgatcgttaaaaagaaggtgctgaagatgtatgagtta
gataggctgtcagtggacgctgcggaaacgggtaagccagtgaattatggtgcattgaca
gagtcacttcgtcagcaggcaacgccctggggcagttatttaacctttcaactatggaac
ctgacatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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