KEGG T00596: Ssed

Shewanella sediminis: Ssed_4137

Entry

Ssed_4137         CDS       T00596

Name

(GenBank) putative outer membrane adhesin like proteiin

K20276

large repetitive protein

Organism

sse Shewanella sediminis

Pathway

sse02024

Quorum sensing

Brite

KEGG Orthology (KO) [BR:sse00001]
09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Ssed_4137

SSDB

Motif

Pfam:

Cadherin_4 Big_9 Big_11 Cadherin_5 HemolysinCabind Cadherin_3

Other DBs

NCBI-ProteinID:

ABV38741

UniProt:

A8G0W8

Position

5056631..5061430

AA seq 1599 aa
MGVSIAKQDAVVTNLVGQLKAKDEQGNVRDVTIGDLIKNGEQLIFSPNAQFILEMADGSV
VDETNIVSEEPSLSPTPEEGLATAPVSTDAEIAALQAQILAGEDPTAGLPETAAGTAAGA
GGNEGTDFITLDRTADETIAGSGYDTSGFDLAAAPAIDELIIAEENILPTLTSSSITLSE
ANLPQGSSPLASALSQANTITLAAPNEISLLVINGVEVFTGGVFAGPVAITSASGTLNIT
GFDAATGILSYSYTLNSAADHSTADLQADTFAVSLTDILGNNTTSTITANLLDDAPSGQD
DLENIGEDDVSVSGSVIINDTQGADSSTVSQITNSDGASLAIAQAANISGSFGSLQISAD
GSYSYLLSTQLDAVQSLAQGEQVTDIFTYQLTDSDGDSVPVTLTLTITGTNDTPVITTEI
GDGADQGTVIESGNEDDGTIVPGVPQTTGTLTATDIDNGAVLSWSGSATGTFGSFVIDAV
SGQWSYTLDNLLVDNFAENSLSQEEFLVTVTDEFGATATQLVTITINGTNDSPIITSSAA
DATGSVNEQPAEGVVLDPDTQTATGTLTASDVDTGAVLSWSGDADSLYGSFSIDPMTGKW
TYTLDNQAAEILAEGEVVQENFLVTVIDEFGATDTQTVTINITGKDEASVIANDSNTIDE
DTVALGNVLDNDSDEDDLLTVNSFTVEGSSYSAGTSVDLANGTLVLNEDGSYVFTPDANW
NGDVPIITYTTNTGATATLTIVVEPVNDAPDALNNSYNLNEGGFTSGNIITDNTGVGVDS
DIDGGALNITHINGIAVTFISGTAILPIGDGTLTINQNGSFTYAHNGEEPEPTSFTYTIN
DGLGGTDTASVFFNINPVNDGPFAEDDSFSVDEGALLGGNVITHIDNNDGLLDSDGGDGG
PLSITQVNGADLVFNLGWSQDIVVGNGTLRIKADGTFEYQHDGSDPEEVPPTFQYTLSDG
SGTDTAVVTITTNPVNDGPEIVSIDLAAVSEEGLLYGIKDGPLPPDDTTDEVSFVGTLSF
TDVDSSNFGISIDDTNIGQYYSGSTEIIWSWSGNTLTGTAGSMTVMTVVFGAVSGTAPDF
SVNYTISLFAPVNHDPESNIEDVLPIAFAVTVDDLNGGSADTTLTVNIEDDSPVDELDPQ
AEPSITNSIGQYITGDLFAPGADGFGNVVFDVTAEVKGNLLYNGSFLSYDMDGNTLVASS
PLDDTVVFTITAVPDGDGQYDYKLLLLEEIQLKTDVTFEVNDAPAGFNETYYVDSDGKIY
SHDGQVVEEIATITSSDSLNSNEHGIGVGSTPSIDTGEKIVFHYGDLGTLGAKIVLGTGV
NATRDGNSVFNYTVTYINGETKEFTGVVLDGTYEIEAKFTDDNFYSNVVSIEIEYVNGDD
FQVAESTSTVASVTENPIDIDFTYTATDADGDSVFDPDGEPGGFTVVVEPDTGSDDINIL
AGTDAEDTLLGGIESDYIIGGTGDDTISGDAGADILIGSEGSDTIDAGVDTDRDAIIWEV
GSADESIDTIYNFNPVYDVLNLSDVLVNEAPGDLEDFLSFNFVGGSTEIVLDTNGTSSAG
GDTLTILLDGVDLSTIYGPTPTEIINGLLDDDALIVDVP

NT seq 4800 nt +upstreamnt +downstreamnt
atgggtgtttcaatagctaaacaagatgccgttgtcactaacttggttggtcaattaaaa
gccaaagatgaacagggaaatgtcagagatgtaacgataggcgatcttatcaaaaacggt
gagcaactaatcttctcgccaaatgcacaatttattctggagatggccgacggctcggtc
gtcgatgaaacaaacatcgtatcggaagagccaagcttatctcctactcctgaggagggg
ctagctacggcgcccgtgtctaccgatgcggaaattgcagccctgcaagctcaaatttta
gcgggtgaagatccaacagccggactgcctgagaccgcggctggcaccgcagccggagcc
ggtggtaacgaaggcaccgactttatcaccttagacagaactgctgatgaaacgatagcc
ggtagtggatatgataccagtgggttcgatctggctgcagcacccgctattgacgagcta
atcattgctgaagaaaatattcttcctacattaacttccagctccatcactctttcagaa
gcaaatctcccccagggctcctctccattagcaagtgctttatcacaagcaaacacaatt
acacttgccgcccccaatgaaatatccctcttagtgataaatggcgttgaagtatttacc
ggtggcgtatttgccggacccgtagcgataacgtctgcaagcggaacattgaatataacg
gggtttgatgctgcaaccggcattctgagttatagctacaccttgaactcagcagccgat
catagcactgcagatcttcaagcagataccttcgccgtgtcgcttaccgatattctgggc
aacaataccacctcaactattaccgcaaacctgctcgatgatgcccctagcggacaagat
gacttagagaacataggagaggatgacgtttcagtttcaggaagtgtcatcattaacgac
actcaaggtgccgactcatctaccgtttcacaaatcactaactcagatggagccagctta
gctatagctcaggcagcgaatattagcggcagcttcgggtcattacaaatatctgccgac
ggtagctatagctatctgttatcgactcagctcgatgcggttcaatctctcgctcagggg
gagcaggttacagatatatttacttaccaactcacagacagtgatggtgatagcgtgccg
gtaacgcttacgctcaccataaccggcaccaacgacacccctgtcattactacagaaata
ggtgatggagccgatcaaggcactgtcatcgaatcaggaaatgaggatgacggcaccata
gttcccggagtgccacaaacaacgggcaccctcaccgcgaccgatatagataacggtgcg
gtattgagctggagcggtagcgcaacaggaaccttcggcagctttgtcatcgatgccgta
agtggacaatggtcatacaccttagataacctgcttgtcgataattttgccgaaaatagc
ttatctcaagaggagttcctggttaccgtgaccgatgagtttggtgcaacagccacacaa
ctggtgaccatcaccatcaacggtaccaatgacagcccaattatcacctcatcggctgcc
gatgccacaggtagcgtcaacgaacagcccgctgaaggggttgtgctcgatccagacact
caaacagccaccggaacactcaccgccagtgatgtagataccggggcagtcctgtcctgg
agcggcgatgccgactcactctatggcagctttagcatagatccgatgaccgggaagtgg
acctataccttagataaccaagcagcagagatcttggccgaaggtgaagtggtacaggaa
aactttttagtcactgttatcgatgaatttggcgccaccgacactcagacagtcactatc
aatattaccggtaaggatgaagcctccgtcatcgctaatgacagtaacaccatagatgaa
gacacggtcgctttaggcaacgtgctggataatgacagtgatgaggacgacctgctaacc
gtcaacagctttaccgtagagggcagtagttacagcgcaggaaccagtgtcgatttagca
aatggcaccttagttcttaacgaagatggtagctatgtgttcacccctgatgccaactgg
aacggcgatgtccccattattacctacaccaccaataccggcgcaaccgcaaccttgacc
atagttgtcgagccagtcaatgatgcccccgatgcgctaaacaacagttataatctcaac
gaaggtggtttcacaagcggaaacatcattaccgataacaccggagtcggtgtcgacagt
gacatagatggcggcgcactgaacatcacccacattaacggtattgcagttacattcatt
agcggcacggcgattcttccaatcggcgatggcaccttaaccatcaaccagaacggtagc
ttcacctatgcccacaacggtgaagaacccgaaccaaccagctttacctacacaattaac
gatggattgggaggaacggacactgcaagcgtattcttcaatatcaacccggtcaacgat
ggcccgtttgccgaagatgacagcttcagtgtcgatgaaggggccctgctcggcggcaac
gtcatcactcacatcgataacaacgatggcctgctggatagcgacggcggcgatggtggc
ccactgagtatcactcaggttaatggcgccgatctggtatttaacctcggctggagtcag
gacatcgtagtgggtaacggtaccttgcgcatcaaagccgacggtaccttcgagtatcaa
catgatggcagcgatcccgaagaggtaccgcctaccttccaatacacattaagtgatggt
tcaggcacagatacagcagtcgtgactatcaccaccaaccctgttaacgatgggcctgaa
attgtcagcatcgatttagcagctgtatcggaagagggtttactctatgggatcaaagat
ggtccgctaccgccagacgatactacggatgaagtctcttttgtcggtacactcagtttc
accgatgtcgacagcagcaacttcggtatatctatagatgacaccaatatcggtcaatac
tattctggaagcactgaaataatctggagttggagtggtaatactcttactggtactgca
ggctcaatgacagttatgacagtcgtatttggcgctgtcagtggtacggcaccggacttc
agcgtcaactacaccattagcctgttcgctccggtaaatcatgatcccgaaagcaatatc
gaagatgtactgcctatagcctttgccgtaacggttgacgatcttaacggtggcagcgcc
gacaccactctcacggtcaatatcgaagatgactcgccagtcgatgagcttgacccacaa
gctgaaccatcaataaccaatagcatcggccaatacatcactggagatctatttgcccct
ggcgccgatggttttggcaacgtggtcttcgacgtcactgccgaggtcaagggtaacctt
ctatataatggctcatttctttcctatgacatggacggaaatacgttagtagcatcgtca
ccacttgacgacaccgtcgtatttaccataactgcggtacccgatggagacggtcaatat
gactacaaactactcttactggaagagatccagctaaaaaccgatgttacatttgaagtc
aatgatgcacccgctggtttcaatgagacctattacgtcgacagcgatggtaaaatatac
tctcatgatggccaagtagttgaagagatcgctacaattaccagctccgatagtcttaat
tccaatgagcatggtatcggcgttggctcaactccctctattgatacaggcgaaaaaatt
gtattccattacggtgacttaggcacgttaggcgcaaaaatagtcctcggaaccggggtc
aatgcaacccgagatggtaacagtgtatttaactacaccgtgacctacataaatggagaa
acgaaagagttcacgggcgtcgttcttgatggaacatacgaaatagaagctaagttcacc
gatgacaatttctactcaaatgtagtatctatcgagatcgaatatgttaacggagatgac
ttccaagttgccgaatcaacctcaacagtagccagcgttacggagaatccaatagatatt
gattttacctacacagcaaccgatgctgatggagatagcgtctttgaccccgacggagag
ccaggtggtttcaccgtcgttgtagaaccagatacaggcagtgacgatatcaatatcttg
gccggaaccgatgccgaagacactcttttaggtggaatagagagtgactacatcatcggc
ggcaccggagatgacacgatatctggtgatgcaggagccgatattctaatcggcagtgag
ggctctgacaccatagacgccggtgtagatacagaccgtgacgccattatctgggaggtg
ggctctgcagacgagagcatagataccatctataacttcaacccggtctacgacgtgctc
aacctatccgatgtgttagtcaatgaagcacctggcgatctggaagacttcctctcattt
aactttgtaggcggcagcacagagatagtcttggatacaaatggaacatcatcagctgga
ggagatacactaaccatactattagatggggtagacctatctaccatctatggtccaact
ccaacggagatcatcaacggactcctcgatgacgatgcactgattgttgatgtaccataa

All links

Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (51)   

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