KEGG   Streptomyces alfalfae: A7J05_04485
Entry
A7J05_04485       CDS       T05110                                 

Definition
(GenBank) Ku protein
  KO
K10979  DNA end-binding protein Ku
Organism
ssia  Streptomyces alfalfae
Pathway
ssia03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A7J05_04485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssia03400]
    A7J05_04485
DNA repair and recombination proteins [BR:ssia03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A7J05_04485
SSDB
Motif
Pfam: Ku Rho_N
Other DBs
NCBI-ProteinID: APY85090
UniProt: A0A1P8TBT5
Position
complement(1208411..1209406)
AA seq 331 aa
MARSIWSGVLTFGLVTVPVGLFTATEDHTIHFHQLQRGTGDRIRYKRINERTGEEVPTDD
IVKGYDLGQGDYVVVEPEELDDIAPGKSKVIDMTGFVDLDRIEPVYFDRTYYVAPRGKEY
VKVYELLRAALERSNKAGIATFTMRSKQYLTALRAQDDVLVMHTMRWADEVRDPREDLDV
MPARRPEVADRELRTAQQLIDALSIDWDPNDYHDTYEERVKELVAAKREGKEVVGEEGPP
DATNVVDLMSALERSVERNRGGGKSKGKDGRRKAPAKTRKRPDEDLSSLTKSELYRRATD
ADVPGRSKMSREQLVEALTGRKARKGRKAAA
NT seq 996 nt   +upstreamnt  +downstreamnt
atggcgagatcgatctggagcggggtgctgaccttcgggctggtcacggtccccgtgggc
ctcttcaccgcgaccgaggaccacaccatccacttccaccagctccagcggggcaccggc
gaccgcatccgctacaagcggatcaacgagcgcaccggcgaggaagtgcccaccgacgac
atcgtgaagggctacgacctcggccagggcgactacgtcgtcgtcgaacccgaggaactc
gacgacatcgccccgggcaagtcgaaggtcatcgacatgacgggcttcgtcgacctcgac
cggatcgagcccgtgtacttcgaccggacctactacgtcgcgccgcgcggcaaggagtac
gtcaaggtctacgagctgctgcgggcggccctcgaacggtcgaacaaggcgggcatcgcc
accttcacgatgcgcagcaagcagtacctcaccgccctgcgcgcccaggacgacgtcctg
gtgatgcacacgatgcgctgggcggacgaggtgcgcgacccgcgcgaggacctggacgtg
atgccggcccggcgccccgaggtcgccgaccgtgagctgaggacggcccagcagttgatc
gacgccctcagcatcgactgggacccgaacgactaccacgacacgtacgaggagcgcgtc
aaggaactcgtcgcggccaaacgcgagggcaaggaggtggtcggcgaggaagggccgccc
gacgccacgaacgtcgtcgacctgatgtcggcgctggagcggagcgtcgagcgcaaccgg
ggcggaggcaagagcaagggcaaggacggccgccgcaaggccccggcgaaaacgaggaaa
cggccggacgaggacctgtcctcgctcaccaagagcgagctgtaccggcgcgcgaccgac
gccgacgtcccgggccgctcgaagatgagccgggagcaactggtcgaagccctcacgggg
cgcaaggcgcgcaaggggcggaaggccgcggcctga

KEGG   Streptomyces alfalfae: A7J05_12160
Entry
A7J05_12160       CDS       T05110                                 

Definition
(GenBank) Ku protein
  KO
K10979  DNA end-binding protein Ku
Organism
ssia  Streptomyces alfalfae
Pathway
ssia03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A7J05_12160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssia03400]
    A7J05_12160
DNA repair and recombination proteins [BR:ssia03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A7J05_12160
SSDB
Motif
Pfam: Ku
Other DBs
NCBI-ProteinID: APY86368
UniProt: A0A1P8TFG7
Position
complement(3049618..3050970)
AA seq 450 aa
MPDVRSIWNGAISFGLVSIPVKLVNATENHSVSFRQVHMEDGGRIRYRKVCEAEDREVDS
AEIGKGYQDADGSIIPITDEDLASLPIPTAKTIEIVAFVPADRVDPLQMDTAYYLSANGV
PATKPYTLLREALRRTDKVALARYALRGRERLGMLRVVDDVIAMHGLLWPDEIREPEGAA
PDARVTVRDAELDLADALMDTLGEVDIATLHDDYRSAVEELVAAKVQGGTTTERAPAADT
GGGKVIDLMAALENSVRAARSARGGEAEAGQAAEEGPVAEVTRLSSRGAKRAGSEAAPAK
ARARGGAAGKAAPTGAAARGRAPASKASSGGASSGKAPAGRASAAKPAAAGSASSAKSAS
AAKDSPAEAGGAGSRDGSAKRAGAKKAAAKKAAAKKTTTGRTAGGKAAGGKAAAGKAAPA
EAARAKAAPAKGGKSAAPAKKGAAKRRASA
NT seq 1353 nt   +upstreamnt  +downstreamnt
gtgccggacgtgcggtcgatctggaacggcgcgatctccttcggcctggtcagcatcccc
gtcaaactggtgaacgccaccgagaaccactcggtctccttccgccaggtccacatggag
gacggcggacgcatccgctaccgcaaggtgtgcgaggcggaggaccgcgaggtggattcg
gcggagatcggcaaggggtaccaggacgcggacggctcgatcatcccgatcacggacgag
gacctggcctcgctgccgatccccacggccaagacgatcgagatcgtcgcgttcgtcccc
gcggaccgcgtcgacccgctccagatggacaccgcgtactacctctcggccaacggggtg
cccgccaccaagccgtacacgctgctgcgcgaggcgctcaggcggaccgacaaggtggcc
ctcgcgcggtacgcgctccggggccgggaacggctcggcatgctgcgcgtggtcgacgac
gtgatcgccatgcacgggctgctgtggcccgacgagatccgggagccggaaggggcggcg
cccgacgcgcgcgtcacggtccgcgacgccgaactcgacctggcggacgccctgatggac
acgctcggcgaggtcgacatcgccacgctccacgacgactaccgctcggcggtcgaggaa
ctggtcgccgcgaaggtgcagggcggtacgacgacggagcgggcccccgccgccgatacg
ggcggcggcaaggtcatcgacctcatggccgccctggagaacagcgtccgggcggcgcgc
tcggcgcggggcggggaggcggaagccgggcaggccgccgaggagggcccggtcgcggag
gtgacccggctgtcctcgcggggcgcgaagcgggcagggagcgaggccgcccccgccaag
gcgcgggcccggggcggggcggcgggcaaggccgccccgaccggagccgccgcccgaggc
agggctcccgcgagcaaggcttcctcgggcggggcgtcctcgggcaaggctcctgcgggc
agggcttctgccgccaagccggccgctgcgggcagcgcttcctccgccaagtcggcctcc
gcggccaaggattcaccggccgaagcgggcggcgccggctctcgggacggctccgccaag
cgggccggcgccaagaaggcggccgccaagaaggcggccgccaagaagacgaccacgggg
cggaccgccggagggaaggcggccggagggaaggccgccgcagggaaggcggctccggct
gaggcggctcgggccaaggcggctccggctaagggcggaaagagcgcggccccggcgaag
aagggcgccgccaagcgccgcgcgtcggcgtga

KEGG   Streptomyces alfalfae: A7J05_32930
Entry
A7J05_32930       CDS       T05110                                 

Definition
(GenBank) Ku protein
  KO
K10979  DNA end-binding protein Ku
Organism
ssia  Streptomyces alfalfae
Pathway
ssia03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A7J05_32930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssia03400]
    A7J05_32930
DNA repair and recombination proteins [BR:ssia03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A7J05_32930
SSDB
Motif
Pfam: Ku
Other DBs
NCBI-ProteinID: APY89848
UniProt: A0A1P8TQD6
Position
7692858..7693805
AA seq 315 aa
MPRPVWSGAISFGLVTIPIKVLPATEKHSIRFHQYHLADMARVRTKKICELDGQEVTSAE
IGKGFEVDRDTVVEISDEELDDMPLPTAKAIEITAFVPYESIDPVRIGEGYYLQGDGQVA
AKPYTLLRKALERSSKAAVAKFAWHGRERLGLLRVQDEVIVLHAMKWDDEVRSPETLAPK
EVELDEAEIERAVLLVDSMTADGIEGQEWATDRYTAALEEVIAAKAGGKQPPAAAEKEEP
EGKVVDLMAALQQSVQQAQASRGEGGRDDQDATVHEMPTERGAKKPAAKKTAAAKKSTSK
RTTAGKKTTAKKRGA
NT seq 948 nt   +upstreamnt  +downstreamnt
atgccccgccccgtctggtccggcgcgatcagcttcggtctggtgaccatcccgatcaag
gtgctgcccgctaccgagaagcacagcatccgcttccaccagtaccacctggcggacatg
gcgcgggtgcgtacgaagaagatctgcgagctggacggccaagaggtcacgagcgccgag
atcggcaaggggttcgaggtcgacagggacaccgtcgtcgagatcagcgacgaggagctc
gacgacatgccgctgcccaccgccaaggcgatcgagatcaccgcgttcgtgccctacgag
tccatcgacccggtcaggatcggggagggctactacctccagggcgacggccaggtggcc
gccaagccgtacaccctgctgcgcaaggcgctcgaacgcagcagcaaggccgcggtggcg
aagttcgcctggcacggcagggaacggctcgggctgctccgcgtgcaggacgaggtgatc
gtcctgcacgccatgaagtgggacgacgaggtgcgcagcccggagaccctggcgcccaag
gaggtcgaactcgacgaggccgagatcgagcgggccgtgctcctcgtcgactcgatgacc
gccgacggcatcgaagggcaggagtgggccaccgaccgctacaccgccgccctggaggag
gtcatcgcggcgaaggcgggtgggaagcagccgcccgcggctgcggagaaggaggagccc
gaggggaaggtcgtggacctcatggcggcgctccagcagtccgtgcagcaggcgcaggcc
tcccgcggcgagggcggccgagacgaccaggacgcgacggtccacgagatgccgaccgag
cgcggagccaagaagccggccgcgaagaagacggcggcggccaagaagtcgacgtcgaag
cggacgaccgcggggaagaagacgacggccaagaagcgcggggcctag

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