KEGG T04303: AL483

Staphylococcus simulans: AL483_09875

Entry

AL483_09875       CDS       T04303

Symbol

gyrB

Name

(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

ssif Staphylococcus simulans

Brite

KEGG Orthology (KO) [BR:ssif00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ssif03032]
    AL483_09875 (gyrB)
   03400 DNA repair and recombination proteins [BR:ssif03400]
    AL483_09875 (gyrB)
Enzymes [BR:ssif01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     AL483_09875 (gyrB)
DNA replication proteins [BR:ssif03032]
Prokaryotic type
  DNA Topoisomerases
   AL483_09875 (gyrB)
DNA repair and recombination proteins [BR:ssif03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      AL483_09875 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c TOPRIM_C HATPase_c_3

Other DBs

NCBI-ProteinID:

AVI00609

Position

2015519..2017438

AA seq 639 aa
MSDVNNTEDYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA
DTIEVIIEKDNWIRVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH
GVGSSVVNALSETLEVFVHRNNKIYNQAYKRGVPQYDLKVVGETEHTGTEIRFKADPEIF
TETTTYQYELLQKRIRELAFLNKGIQLTLRDERGEEVKEDSYHYEGGIKSYVELINENKE
PLFDEPVYLHDRKDDVEVEIALQYNSGFSTNLLSYANNIHTYEGGTHEDGFKRALTRVLN
SYGIQQGIMKDDKERLSGEDTREGLTAVVSIKHSNPQFEGQTKTKLGNSEVRQIVDRLFT
EDMERFLLEHPQVARIIVEKGMMASRARIAAKKAREVTRRKSTLEVSSLPGKLADCSSKN
PEESEIFIVEGDSAGGSTKLGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRSMITAF
GTGIGEEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLF
KLTQGKQKYYVFNERELEKLKSELKPTPKWSIARYKGLGEMDADQLWETTMNPEHRSMLQ
VTLEDAIEADLTFEMLMGDVVENRRQFIEENAVYANLDF

NT seq 1920 nt +upstreamnt +downstreamnt
ttgtcagatgtgaacaacacggaagattatggtgctggacaaatacaggtattagaagga
cttgaagccgttcgtaaacgtccaggtatgtatatcggatcgacttcagaaagaggtctg
caccatcttgtatgggaaattgtagataatagtattgacgaagcattggctggctatgct
gatacaatcgaagtcattatcgagaaagataactggattcgtgtaacagataacggccgt
ggtattccagttgatattcaagaaaaaatgggccgtccagcagttgaggttatcttaact
gtattgcatgccggcggtaaattcggcggtggcggatacaaagtatcaggcggtctgcat
ggtgtaggatcttcagttgttaacgcactttctgaaacattagaagtgtttgtacaccgt
aataataaaatttataaccaagcgtataaacgcggggttcctcaatatgatttaaaagtg
gttggcgaaacagaacatacaggaactgaaatccgctttaaagctgaccctgaaatcttt
actgaaacaacaacgtatcagtatgaattgcttcaaaaacgtattcgtgagttggctttc
ttaaacaaaggcattcagcttactttacgtgatgaacgcggtgaagaagtaaaagaagac
tcatatcactatgaaggcggtattaaatcttacgttgagttgatcaatgagaataaagag
cctttatttgatgagccagtttacttacatgaccgtaaagatgacgtggaagtagaaatt
gcattgcaatacaacagcggtttctcaacaaacttattatcttatgcgaacaatatccat
acttacgaaggcggtacacatgaagacggctttaaacgtgcgttaacacgtgtattgaac
agttatggtattcaacaaggcattatgaaagatgataaagagcgtttatctggtgaagat
acacgtgaaggtttaacagcggttgtctcaattaagcacagcaaccctcaattcgaagga
caaacaaaaacaaaactcggcaactctgaagttcgtcaaatcgtagacagactcttcaca
gaggatatggagcgtttcttgttagaacatccacaagttgctcgtattattgtcgaaaaa
ggtatgatggcttctcgtgcacgtatcgcagctaaaaaagcacgtgaagtaactcgtaga
aaatcaacattagaagtttcaagcttaccaggtaaattagctgactgttcaagtaaaaac
cctgaagagagtgaaatcttcatcgtcgaaggtgactctgccggggggtctacaaaactt
ggtcgtgattcaagaacacaagcgattttaccgctacgtggtaagatcttgaacgttgaa
aaatcacgtttagacagaatcttaaataataatgaaatccgttctatgattactgcattc
ggtaccggtatcggagaagaattcgatatttcgaaagcacgttatcacaaaatcgttatc
atgacagatgccgatgtggatggtgcgcatatcagaacactgttattgacattcttctat
cgcttcatgcgtccgttgattgaagcgggttatgtatacattgcacaaccgcctttattc
aaattgacacaaggtaaacagaaatactatgtctttaacgaacgtgaattagagaaattg
aaatctgaattgaaaccgacaccgaaatggtctattgcccgttataaaggtttaggtgaa
atggatgcagatcaattatgggaaacaacaatgaatccagaacatcgttcaatgttacaa
gtgacattagaagatgcgattgaagcggatttaactttcgaaatgttaatgggcgatgtt
gtagaaaaccgtcgtcaattcatcgaagaaaatgcggtttacgcgaacttggatttctaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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