KEGG   Sediminispirochaeta smaragdinae: Spirs_1586
Entry
Spirs_1586        CDS       T01287                                 
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
  KO
K02405  RNA polymerase sigma factor FliA
Organism
ssm  Sediminispirochaeta smaragdinae
Pathway
ssm02020  Two-component system
ssm02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ssm00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Spirs_1586
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Spirs_1586
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssm03021]
    Spirs_1586
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:ssm02035]
    Spirs_1586
Transcription machinery [BR:ssm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Spirs_1586
Bacterial motility proteins [BR:ssm02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    Spirs_1586
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 HTH_23 UPF0122 GerE HTH_10 HTH_37
Other DBs
NCBI-ProteinID: ADK80713
UniProt: E1R5U8
Position
1699232..1700020
AA seq 262 aa
MGDQLLEEKTEAELWELYRNSRDPKIRDRFIEQYSPLVKYVAGKVAIGMPQNVEFDDLVG
FGVFGLFDAIEKFDPEKHVKFKTYAVTRIRGAIYDELRSIDWVPRSVRQKAREIEETIHR
LEASLGRAASDKEIADELGISVADFQKLMLKISGTSVLSLNDVWYTGDENDTVAIVDGIE
SPQSLNPDIIIEKEEIRRVIVQAISELPEKEKKVLVLYYYEDLTLKEIGKVLDVTESRVS
QLHTKAIMRLRSKLTNMKKGIY
NT seq 789 nt   +upstreamnt  +downstreamnt
atgggggatcagttattggaagagaagacggaagccgagctctgggagctctaccggaac
agccgtgatcctaaaatccgggatcgcttcatcgaacaatactctccgctggtcaagtat
gtggccggaaaagtggcgatcggaatgccccagaatgttgaattcgacgatcttgtcgga
ttcggcgtttttgggctcttcgatgccattgagaaattcgaccccgagaagcatgtaaag
ttcaagacctatgcggttacgagaatcaggggcgccatctacgatgaacttcgaagcatc
gactgggttccccgatcggtacgtcagaaagcgagagagatcgaagagactattcatcga
ctcgaggcctccctcggacgggctgcgtccgataaggagattgccgatgagcttgggatc
agcgtcgctgattttcagaaattgatgctcaagataagcggtacttccgtcctttctctc
aatgatgtctggtataccggagatgagaatgatacggttgccatcgtagacggtatagag
agccctcagagtttgaatccggatatcatcattgagaaagaagaaattcgcagggttatt
gttcaggcgatcagcgaacttcccgaaaaagaaaaaaaggtgctggtcctttattactat
gaagacttgaccttgaaggagatcggaaaggtcctggatgtcacggagtcgcgggtgagc
caactccatacaaaggccatcatgcgtcttcgctcaaaactgaccaatatgaaaaagggg
atctattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (37)   

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