KEGG   Streptococcus suis SC070731 (serotype 2): NJAUSS_1294
Entry
NJAUSS_1294       CDS       T02536                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ssus  Streptococcus suis SC070731 (serotype 2)
Pathway
ssus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NJAUSS_1294
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssus03019]
    NJAUSS_1294
   03016 Transfer RNA biogenesis [BR:ssus03016]
    NJAUSS_1294
Enzymes [BR:ssus01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NJAUSS_1294
Messenger RNA biogenesis [BR:ssus03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NJAUSS_1294
Transfer RNA biogenesis [BR:ssus03016]
 Prokaryotic type
  tRNA degradation factors
   NJAUSS_1294
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 CSD RNase_II_C_S1 FaeA
Other DBs
NCBI-ProteinID: AGG64759
Position
complement(1377898..1380267)
AA seq 789 aa
MKNEIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEGSRQLVFDNAGRITLPA
PKISKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNFAIEGDRVEIAIKKVADRL
KGTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSKNQKIAQKIYIKKSPLVLTGT
EILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEANRV
PESPSEQDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTE
GSALDKEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDRKGKVVKH
WIGQTVIKTTFRMTYSDVNDMIAGNQEKLATYKAIVPSVELMVKLHETLETMRYKRGALN
FDTTEAKIIVNKDGLPVDIQLRQRGIAERMIESFMLAANECVAEHFAKLDLPFIYRIHEE
PKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQAR
YSEHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVRDYGHNPTEKAEHFEQVIPELAKSS
SSLERRAIEVEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHVTNL
NEYYQFHERTLTLQGEKSGRVFHVGQPIRIKLTRADKMTGEIDFAHMPSELDIVEKALKA
KRRTASHSNRDRDDRSGRGRGKHYKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEV
AKKNKKKRR
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaaaaacgaaattataaactatattaaagaagttggtcctgtgaccatggaccagctg
gcagatcagtttggagccagttctgctaagagctttacagacttggtcaagctggtttct
agcatggaaggcagtcgtcaacttgtctttgacaatgctgggcggattactcttcctgct
ccaaaaatctccaagaacaaggtgaccttacagggtatttttcgtgcccacaagtctggt
tttggctttgtgaccattgacgaggaggaagatgatctctttgtcagtcgtgacgatgtt
aactttgctatcgaaggtgacagagttgagattgcaattaaaaaggttgcagatcgtctc
aagggaactgccgcagaagcggaagtcattgatattttggaacatagcctgaaaactgcg
gtgggcttgattgtctttgacgaagacaagccagaatatgcaggctacatcaagtctaaa
aaccagaaaatcgctcagaagatttacatcaagaagtcacctttggtattgaccgggacg
gaaatcctcaaagttgacattgaagcctatccaaacaagaaacgggaccactttgttgcg
accattcgggacgtggtgggccataaggacgatgtgggaatcgatgtcttggaagtcttg
gagtccatggacatcgtgtcggagtttccagatgaagtcttggcggaggccaatcgggtg
ccagaaagtccgtcagaacaggactttgaagggcgtttggacctgcgggatgaaatcatc
tttaccatagacggtgcggatgccaaggacttggacgatgcggtccatatcaagcagctc
aagaacggcaatctggagttgggtgtccatatcgctgatgtcagctactatgtgacggaa
ggctctgccttggacaaggaggctgtcaagcgtgggacctctgtctatgtgaccgaccgt
gtggtaccaatgttgccagaacgcctgtcaaacggcatttgttccctcaatccaaatgtg
gatcgtctgacccagtcggctattatggaaattgaccgcaagggaaaggtggtcaagcac
tggattggccaaacagttattaaaacgaccttccgtatgacctattccgatgtcaatgac
atgattgctggaaatcaggaaaagcttgctacatacaaggctatcgtgccaagtgtagag
cttatggttaaactccatgaaacattggaaaccatgcggtacaaacgcggtgccctcaac
tttgacacgacagaagccaaaatcatcgtcaacaaggacggtctgccagtcgatatccag
ctacgtcagcggggcattgctgagcggatgattgagtccttcatgttggcagccaatgag
tgcgttgctgagcattttgccaagctggacctgccttttatctatcggatccacgaggag
cctaagtcagacaagttgcagaagttcatcgactatgcgaccagctttggtctgacggta
tatggtacggctagctctatcagccaggatgcccttcaagatcttatggagcgggtcaag
gatgaaccctatgcggacgtcctcaacatgatgttgctgcgttctatgcagcaggcacgc
tactcggagcacaaccacggccactacggactgggtgcggagttctacacccacttcacc
agtcctatccgccgctatcccgacctgctggttcaccggatggtgcgggactatggtcat
aatcctacggaaaaagcagagcattttgagcaggttattcctgagcttgccaagtcttcg
tccagtttagaacgccgtgccattgaggtagagcgggaagtcgaagccatgaagaaggca
gagttcatgcaagaatttgttgggcaagagtttgatggtgtcgtatctagcgtagtcaag
tttggtctctttgttgagttgccaaacaccgttgaaggactgatccatgttaccaacctc
aacgagtactaccagttccacgagcgaactctgaccttgcagggtgagaaatcaggtcgt
gtcttccatgtcggtcagccaatccgtatcaagctaacgcgggcggacaagatgacaggg
gaaatcgattttgcccacatgccgtccgaactggatattgtcgaaaaagctttgaaagcc
aagcggagaactgctagtcactccaaccgtgaccgtgatgatcggtcagggcgaggacgg
ggcaagcactacaaacaagaagctgctggtcgcgacagcggacgtcacaagtctggaaaa
gaccacaagtcaaaaagtggcaaaaaagacaagaaaaagaaaccattttacaaagaagtg
gctaaaaagaacaagaagaaaaggagatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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