KEGG   Streptococcus suis 98HAH33 (serotype 2): SSU98_0122
Entry
SSU98_0122        CDS       T00515                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ssv  Streptococcus suis 98HAH33 (serotype 2)
Pathway
ssv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ssv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SSU98_0122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssv03021]
    SSU98_0122
   03400 DNA repair and recombination proteins [BR:ssv03400]
    SSU98_0122
Enzymes [BR:ssv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SSU98_0122
Transcription machinery [BR:ssv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SSU98_0122
DNA repair and recombination proteins [BR:ssv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SSU98_0122
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 Peptidase_M23 NusG_add
Other DBs
NCBI-ProteinID: ABP91282
UniProt: A4VYU3
Position
110657..114229
AA seq 1190 aa
MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFLDYGLKEVFEDVLPVSNFTD
TMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLVNKETGEIKTQEVFFGEFPIMT
EMGTFIINGAERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVRNTIEKDIHKNPADSRTDEALKE
IYERLRPGEPKTAESSRSLLTARFFDPRRYDLAPVGRYKINKKLNLRTRLLNQTLAEHVI
NGETGEIVLEAGTVLSRDVLEKVEAQFDELNLVEYIPNDNAVLLEPVLLQKFKIVAPKDP
ERVVTVIGNANPAENVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLA
NQVRIGLTRMERNLRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNPL
SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL
NKYGFIQTPYRKIDRATGTVTNEIVWLTADEEDAYIVAQSTSPLDENNRFVDKIVMGRHQ
GNNQEFPADSADFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPY
VGTGMEYQAAHDSGAAIIAQHDGKVVYADADKVEVRREDGSLDVYHISKFRRSNSGTAYN
QRTLVKLGDIVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDD
VYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGK
VTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSGV
NMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSR
MNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEP
FDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA
YGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVL
DEDNNEVELRDLDEGEDDDIIHVDDLEKARAKAAADAAAAFAAEEAEGKE
NT seq 3573 nt   +upstreamnt  +downstreamnt
ttggcaggacatgaagttcagtacggtaagcaccgtacccgtcgtagtttttcaagaatc
aaggaagttcttgatttaccaaatttgattgaaattcaaacggactctttccaagacttt
ttagattacggtttgaaagaagtctttgaagatgtacttccagtttcaaactttacggat
accatggaattggaattcgttggttatgaattgaaagagcctaaatacacattggaagag
gcgcgtgcgcatgatgcgaactactcagctccaatttatgtaactttccgtctggtgaat
aaagaaactggcgagatcaagacacaagaagtcttcttcggtgagtttccaatcatgact
gaaatgggtaccttcatcatcaacggtgcagagcgtatcatcgtttctcagttggttcgt
tcaccaggtgtctacttcaatgataaagtagataagaatggtaaagtaggttatggatca
acggttattcctaaccgtggagcttggctggaattggaaacagactcaaaagacattgcc
tacactcgtattgaccgtacgcgtaagattccgttcacaacgcttgttcgtgcgcttggt
ttctcaggcgatgatgaaatctttgacatcttcggtgatagcgaattggttcgcaatacc
atcgaaaaagatattcataaaaacccagcagattctcgtacggatgaagcgcttaaggaa
atctatgagcgccttcgtccaggtgaaccaaagacagctgaaagctctcgtagtcttttg
acagctcgtttctttgacccacgtcgttacgacttggcacctgttggtcgttataagatt
aataaaaaactcaaccttcgtactcgtttgctcaaccaaacacttgctgagcatgtgatt
aacggtgagacaggcgaaattgtcttggaagctggtactgtcttgagccgtgacgtgctt
gaaaaagtagaagcacaattcgatgagctcaacttggtagaatacattccaaatgacaat
gctgttcttcttgagccagttcttttgcagaaattcaagattgtagctcctaaggatcca
gaacgtgttgtgacggtgattggtaatgctaatcctgcagaaaacgtacgtacagtaaca
cctgcggacatcttggctgaaatgagctacttcctcaacttggctgagggtcttggtcgt
gtagatgatattgaccacttgggtaaccgtcgtattcgtgccgttggtgaattgcttgct
aaccaagtacgtatcggtttgactcgtatggaacgtaacttgcgtgagcgtatgtctgtt
caagacaatgaagtattgacgccacaacaaatcatcaatatccgtcctgttacagccgca
atcaaagaattctttggttcatctcagttgtcacagttcatggaccaacacaacccactt
tctgagttgtctcacaaacgccgtttgtcagccttgggacctggtggtttgactcgtgac
cgtgctggttatgaggttcgagacgttcactacactcactatggtcgtatgtgtccgatt
gaaacgcctgagggaccaaacatcggtttgatcaacaacttgtcttcttatggtcacctc
aacaagtatggcttcatccaaacaccataccgcaagattgaccgtgcaactggtacagtt
acaaatgagatcgtttggttgacagccgatgaagaagatgcttatattgtagcccaatca
acatcgccacttgatgaaaacaaccgtttcgttgataagattgttatgggacgtcaccaa
ggtaacaaccaagagttcccagcagattcagcagatttcatggacgtttcacctaagcag
gtagttgccgttgcgacagcatgtattcctttcttggaaaacgatgactccaaccgtgcc
ctcatgggtgccaacatgcaacgtcaggctgttccattgattgatccaaaagcaccttac
gttggtactggtatggaataccaggctgctcacgactcaggtgcggcaattatcgctcaa
cacgatggtaaggttgtttacgcagatgcggacaaggtagaagtgcgtcgtgaagatggc
tcgcttgatgtctaccacatttctaaattccgtcgttcaaactcgggtactgcctacaac
caacgtacccttgtaaaattgggcgacatcgtagaaaaaggcgacttcatcgcagatgga
ccttctatggaaaatggggaaatggctcttggtcaaaaccctatcgttgcctacatgacg
tgggaaggttacaacttcgaggatgcggttatcatgtctgaacgccttgtgaaagatgat
gtctatacatctgttcacttggaagaatacgaatcagaaacacgtgatactaagttaggc
cctgaagaaatcactcgcgaaattccaaacgttggtgaagatgcccttcgcaacttggac
gaaatggggattatccgtattggtgccgaagttaaagagggcgacattcttgttggtaaa
gtcacaccaaaaggtgaaaaagatctttctgctgaagagcgtctcttgcacgcaatcttc
ggtgacaagtcacgtgaagtacgtgatacctctcttcgtgtacctcacggtgccgatggt
gtcgttcgtgatgtgaaaatctttactcgtgccaacggtgatgaattgcaatcaggtgtt
aacatgttggttcgtgtttacatcgctcaaaaacgtaagatcaaggtcggagataagatg
gccggtcgtcacggtaacaagggtgtcgtttcacgtattgtacctgttgaggatatgcca
tatcttccagatggaacaccagttgacatcatgttgaacccactcggggtgccatcacgt
atgaacatcggtcaggttatggaacttcacttgggtatggcggctcgcaacttgggcatc
catatcgcaacaccagttttcgatggtgcaagttcagaagacctctggtcaactgttaaa
gaagcaggtatggactcagatgccaagaccattctttacgatggacgtacaggtgaacca
tttgacaaccgtgtatctgttggtgtcatgtacatgatcaagcttcaccacatggttgat
gataaacttcacgcccgctcagtcggaccatactcactcgttacccaacagccgctcgga
ggtaaggctcagtttggtggtcagcgtttcggtgagatggaggtttgggcccttgaagcc
tacggtgcttcaaacgtccttcaagaaatcttgacttacaagtcagatgatgtgacaggc
cgtctgaaagcctatgaagccatcaccaaaggtaaaccaattccaaaaccaggtgttcca
gaatcattccgcgttcttgtcaaagaattgcaatcacttggtttagatatgcgtgtcctt
gatgaagacaacaacgaagtagaattgcgtgaccttgatgaaggtgaagatgatgacatc
atccacgtagatgatcttgaaaaagcacgtgcaaaagccgcagctgacgcagccgcagcc
tttgcagcagaagaagcagaaggcaaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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