KEGG   Streptococcus suis GZ1 (serotype 2): SSGZ1_1235
Entry
SSGZ1_1235        CDS       T02023                                 
Name
(GenBank) 3'-5' exoribonuclease
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ssw  Streptococcus suis GZ1 (serotype 2)
Pathway
ssw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SSGZ1_1235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssw03019]
    SSGZ1_1235
   03016 Transfer RNA biogenesis [BR:ssw03016]
    SSGZ1_1235
Enzymes [BR:ssw01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SSGZ1_1235
Messenger RNA biogenesis [BR:ssw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SSGZ1_1235
Transfer RNA biogenesis [BR:ssw03016]
 Prokaryotic type
  tRNA degradation factors
   SSGZ1_1235
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 RNase_II_C_S1 CSD FaeA
Other DBs
NCBI-ProteinID: ADE31692
UniProt: D5AIM7
Position
complement(1284377..1286746)
AA seq 789 aa
MKNEIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEGSRQLVFDNAGRITLPA
PKISKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNFAIEGDRVEVAIKKVADRF
KGTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSKNQKIAQKIYIKKSPLVLTGT
EILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEANRV
PESPSEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTE
GSALDQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDCKGKVVKH
WIGQTVIKTTFRMTYSDVNDMIAGNKEKLDKYKTIVPSVELMVKLHETLETMRYKRGALN
FDTAEAKIIVNKDGLPVDIQLRQRGIAERMIESFMLAANECVAEHFAKLDLPFIYRIHEE
PKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQAR
YSEHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVREYGHNPSEKAEHFEQVIPELAKSS
SSLERRAIDAEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHVTNL
NEYYQFHERTLTLQGEKSGRVFRVGQPIRIKLTRADKMTGEIDFAHMPSELDIVEKALKA
KRRTASHSNRDRDDRSGRGRGKHYKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEV
AKKNKKKRR
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaaaaacgaaattataaactatattaaagaagttggtcctgtgaccatggaccagctg
gcagatcagtttggagccagttctgctaagagctttacagacttggtcaagctggtttct
agcatggaaggcagtcgtcaacttgtctttgataatgctgggcggattactcttcctgct
ccaaaaatctctaagaacaaggtaaccttacaggggattttccgtgctcacaagtcaggt
tttggctttgtgaccattgatgaagaggaagatgatctctttgtcagccgtgacgatgtc
aacttcgctatcgagggcgaccgagtggaagtggctatcaagaaagtggcggacaggttc
aaggggacggctgcggaagcggaagtcattgatattttggaacatagcctgaaaacagcg
gtgggcttgattgtctttgacgaagacaagccagagtatgcaggctacatcaagtctaaa
aaccagaaaatcgctcagaagatttacattaagaagtcacctctggtattgaccggaacg
gaaatcctcaaagttgacattgaagcctatccaaacaagaaacgggaccactttgttgcg
accattcgggacgtggtggggcataaggatgatgtagggatcgatgtcttggaagttttg
gaatccatggatatcgtgtcggaattccctgacgaagttttggcggaggccaatcgggta
ccagaaagtccgtctgagaaggactttgaaggacgcttggacctgcgagatgagatcatc
tttactatcgacggtgcagatgccaaggacttggatgatgcggtccatatcaagcagctc
aagaatggcaatctggaactgggtgtccatatcgctgatgtcagctactatgtgactgag
ggctcagccttggaccaggaagctgtcaagcggggaacctctgtctatgtgaccgaccgt
gtggtgccaatgctgccagaacgtttgtcaaacggcatttgttccctcaatccaaatgtg
gatcgcctgacccagtcggctattatggaaattgactgcaagggcaaggtggtcaagcac
tggattggccaaacggttatcaaaaccaccttccgtatgacctattccgatgtcaatgac
atgattgcaggtaacaaggaaaagctggacaaatacaagacaatcgtgccaagtgttgag
ctcatggtcaaactccatgaaaccctggaaaccatgcgctacaagcgtggggctctcaac
tttgatacagctgaagctaaaatcatcgtcaacaaggatggtctgccagtcgatattcaa
ctgcgccagcgaggcattgccgagcggatgattgagtccttcatgctagctgccaacgag
tgcgttgccgagcattttgctaagttggacttgccttttatctatcggatccacgaggag
cctaaatcagacaagttgcagaagttcatcgactatgcgactagctttggtctgacggta
tatggtacagccagctctatcagccaggacgcccttcaggatctcatggagcgggtcaag
gatgaaccctatgcggacgtcctcaacatgatgttgctacgttccatgcaacaggcgcgt
tactcagagcacaaccacggccattacggactgggtgcggagttctacacccacttcacc
agtcctatccgccgttatcccgacctgctggttcaccgtatggtgcgggaatatggtcac
aatccttcggaaaaagcagagcattttgagcaggtcattcctgagcttgccaagtcttca
tccagtctagaacgccgtgccatcgatgcagagcgggaagttgaagctatgaagaaggca
gaattcatgcaagaatttgttgggcaagagtttgatggtgtcgtatctagcgtagtcaag
tttggtctctttgttgagttgccaaacaccgttgaaggactgatccatgttaccaacctc
aacgagtactaccagttccacgagcgaactctgaccttgcagggtgagaaatcaggtcgt
gtcttccgtgtcggtcagccaatccgtatcaagctaacgcgggcggacaagatgacaggg
gaaatcgattttgcccacatgccgtccgaactggatattgtcgaaaaagctttgaaagcc
aagcggagaactgctagtcactccaaccgtgaccgtgatgatcggtcagggcgaggacgg
ggcaagcactacaaacaagaagctgctggtcgcgacagcggacgtcacaagtctggaaaa
gaccacaagtcaaaaagtggcaaaaaagacaagaaaaagaaaccattttacaaagaagtg
gctaaaaagaacaagaagaaaaggagatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system