KEGG   Spiroplasma syrphidicola: SSYRP_v1c02950
Entry
SSYRP_v1c02950    CDS       T02677                                 
Symbol
pdhD
Name
(GenBank) pyruvate dehydrogenase E3 component
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
ssyr  Spiroplasma syrphidicola
Pathway
ssyr00010  Glycolysis / Gluconeogenesis
ssyr00020  Citrate cycle (TCA cycle)
ssyr00260  Glycine, serine and threonine metabolism
ssyr00280  Valine, leucine and isoleucine degradation
ssyr00620  Pyruvate metabolism
ssyr00630  Glyoxylate and dicarboxylate metabolism
ssyr00640  Propanoate metabolism
ssyr00785  Lipoic acid metabolism
ssyr01100  Metabolic pathways
ssyr01110  Biosynthesis of secondary metabolites
ssyr01120  Microbial metabolism in diverse environments
ssyr01200  Carbon metabolism
ssyr01210  2-Oxocarboxylic acid metabolism
ssyr01240  Biosynthesis of cofactors
Module
ssyr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:ssyr00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SSYRP_v1c02950 (pdhD)
   00020 Citrate cycle (TCA cycle)
    SSYRP_v1c02950 (pdhD)
   00620 Pyruvate metabolism
    SSYRP_v1c02950 (pdhD)
   00630 Glyoxylate and dicarboxylate metabolism
    SSYRP_v1c02950 (pdhD)
   00640 Propanoate metabolism
    SSYRP_v1c02950 (pdhD)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    SSYRP_v1c02950 (pdhD)
   00280 Valine, leucine and isoleucine degradation
    SSYRP_v1c02950 (pdhD)
   00310 Lysine degradation
    SSYRP_v1c02950 (pdhD)
   00380 Tryptophan metabolism
    SSYRP_v1c02950 (pdhD)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SSYRP_v1c02950 (pdhD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssyr04147]
    SSYRP_v1c02950 (pdhD)
Enzymes [BR:ssyr01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     SSYRP_v1c02950 (pdhD)
Exosome [BR:ssyr04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   SSYRP_v1c02950 (pdhD)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox_3 Pyr_redox GIDA FAD_binding_2 FAD_oxidored HI0933_like NAD_binding_8 Thi4 DAO AlaDh_PNT_C 3HCDH_N FAD_binding_3 Lys_Orn_oxgnase Rep_1B
Other DBs
NCBI-GeneID: 16153424
NCBI-ProteinID: AGM25891
UniProt: R4UKV0
Position
315052..316434
AA seq 460 aa
MDKFDVIVVGAGPGGYVCAIKAAQEGLKTMIVEKEYYGGVCLNVGCIPTKALLKSSKVYD
IIQHADTYGIDIGDLGKIAPNWEKMQDRKSKVVNKLTSGVEFLLKKNKVTIVKGTAKALD
KNTIEVDGKKYSCDNLVIATGSTSRMLPLPGFEEGFKAGYVISSTEALKLPKIPKKLAVI
GGGVIGVEFACLYRRLGTEVTILQGLDTILEILDKDVRDEMTKLLIKNKVKIETNVKIKE
IKDKAVHYTNDKGEEVVLKTDYCLVSVGRKPIINGFENIGLNINERQSIVVDDGCRTNLP
GVYAIGDVVGKAMLAHVASVQGLIVVDNIKGRNQKIDYNKIPACIYSYPEVAVVGKTEDE
LIKAKIPYKAFKFPIAANGKALADGETDGFVKIICEPKYGEILGAHMICGTATDMISEIT
TCMEMEGTIYDLGRAITPHPTLSEMIMEAVHGLEGHAIHI
NT seq 1383 nt   +upstreamnt  +downstreamnt
atggataaatttgatgttattgttgttggtgctggtcctggtggatatgtttgtgcaatt
aaagcagcccaagaagggttgaaaacaatgattgtcgaaaaagaatattacggaggagta
tgtctaaacgttggttgtattccaacaaaagcattattaaaaagctcaaaagtttatgac
attattcagcatgctgacacctatggaattgatattggggatttaggtaaaattgcccct
aattgagagaaaatgcaagatcgtaaaagtaaagttgttaataaattaacaagtggggtt
gaatttttattaaagaaaaataaagtcacaattgttaaaggaacagctaaagcgcttgat
aaaaatacaattgaagttgatggtaaaaaatatagttgtgacaacttagttattgcaaca
ggaagtacaagtcgaatgctaccattacctggttttgaagaaggttttaaagctggttat
gttatttcttcaaccgaagctttaaaattaccaaaaattcccaaaaaacttgctgttatt
gggggtggtgtaattggcgttgaatttgcttgtttataccgtcgtttaggaacagaagta
acaattttacaagggttagatacaattttagaaattctggacaaagatgttcgtgatgaa
atgacaaaattattaatcaaaaacaaagttaaaattgaaacaaatgttaaaatcaaagaa
attaaagataaagcagttcattacactaatgataaaggtgaagaagttgttttaaaaaca
gattattgtttagtatctgttggtcgtaaaccaattattaatggttttgaaaatattggg
ctaaatattaatgaacgccaaagtattgttgttgatgatggttgtcgtactaacttacca
ggagtttacgcgattggtgatgttgttgggaaagcaatgttggcccatgttgcctcagtg
caggggttaattgttgttgacaacattaaagggcgtaatcaaaaaattgattataataaa
attccagcttgtatttattcatatccggaagttgccgttgttggaaaaaccgaagatgaa
ttaatcaaagcaaaaattccctacaaagcctttaaattcccaattgccgcaaatggaaaa
gccttagcggatggggaaactgatggatttgttaaaattatttgtgaaccaaaatatggt
gaaattttaggagctcatatgatttgtggaacagccactgacatgatttctgaaattaca
acatgtatggaaatggaaggaacaatttatgatttaggacgggcaattactccccatcca
actttatcagaaatgattatggaagctgtccatggtttagaaggacacgcaattcatatt
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (21)   
   KEGG PATHWAY (14)   
   KEGG MODULE (7)   
Chemical substance (27)   
   KEGG COMPOUND (27)   
Chemical reaction (11)   
   KEGG ENZYME (1)   
   KEGG REACTION (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (84)   

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