KEGG   Spiroplasma syrphidicola: SSYRP_v1c08660
Entry
SSYRP_v1c08660    CDS       T02677                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
ssyr  Spiroplasma syrphidicola
Pathway
ssyr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssyr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SSYRP_v1c08660 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssyr03019]
    SSYRP_v1c08660 (pnp)
   03016 Transfer RNA biogenesis [BR:ssyr03016]
    SSYRP_v1c08660 (pnp)
Enzymes [BR:ssyr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     SSYRP_v1c08660 (pnp)
Messenger RNA biogenesis [BR:ssyr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SSYRP_v1c08660 (pnp)
Transfer RNA biogenesis [BR:ssyr03016]
 Prokaryotic type
  tRNA degradation factors
   SSYRP_v1c08660 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 KH_1 PNPase SPATA25 DsrC aRib
Other DBs
NCBI-GeneID: 16153404
NCBI-ProteinID: AGM26455
UniProt: R4UJX2
Position
complement(926941..929049)
AA seq 702 aa
MAKQIFKKIINNKEIIVEHGQLAKQASGSILVRLGNTVILATVTTNLTPTELDFFPLTVV
FQEKLYSVGKIPGGFLKREGKPSEYGILSARVIDRALRPLFSENFRNEVQVVINVLAVDN
DHDVRIASLFGASLALGISKIPFNGPVASALVTINEKNEIIVMPTLEQLNNGRMELIVAG
TENEINMVEAGCEQLPEEEVLRAIMAGHQFIKELNAFQSEIINAVGEPKMVVELFTIRED
IINFVQENYADQLIKAAQIREKIERYQTIHEIENQAMAQFPLPEGNDEKLKRRMLLELST
CLKNVVREEIRHQITVQKLRLDNRQLDEIRPLASEIDLLPIVHGSALFTRGETQVLSVVT
LGALGENQIIDGITDEEGKRFMHHYNFPPFSVGETGRMGAPSRREIGHGALGEKALLQIL
PSEKEFPYTIRIVSEVLESNGSTSQAAICASTLALMAAGVPIKTPVVGIAMGLVKNDENY
TILTDIQGMEDHLGDMDFKVAGTKDGICALQMDIKISGITEEILWEALLAAKKARATLLA
NILATIPAPRTELAPTAPKMKTFMIPVEKIRDVIGTGGKTITSIIEKSNNVKIDIEDDGQ
VTIYHKDYEAINNAYQLIKDIVFPVEINQELIGTVVKIEKFGAFVNLKENLDGLIHISKL
ADHRVEKTEDIVNVNDKVKVKVIELDSKGKIKLQLLEVITSK
NT seq 2109 nt   +upstreamnt  +downstreamnt
atggcaaaacaaatctttaaaaaaataattaataataaggaaattattgttgaacatggg
cagttagcaaaacaggcaagtggttcaattttagttcgcttagggaatactgttattttg
gcaacggtgacaacgaacctaactccaaccgaattagattttttccccttaacagtggta
tttcaagaaaagttatattcagttggaaaaattccgggcgggtttttaaaacgagaagga
aaaccatcagaatatggaattctatcggcccgagttattgaccgagctttacgaccatta
ttttcggaaaactttcgtaatgaggtccaagttgtcattaatgttttagctgttgataat
gatcatgatgtgcgaattgctagtttatttggggcctcattagcgttaggaatatcaaaa
attccttttaatggtcctgtcgctagtgccttagttacaattaacgaaaaaaatgaaatc
attgtaatgccaaccttagaacaattaaataatgggcgcatggaattgattgttgcggga
accgaaaatgaaattaatatggtggaagcaggttgtgaacaattacctgaagaagaagtt
ttacgggcaataatggctggtcatcaatttattaaggaattaaatgctttccaatctgaa
atcattaatgctgttggtgaaccaaaaatggtggtcgaattatttacgattcgcgaagac
attatcaattttgttcaggaaaattatgctgatcaattaattaaagccgcgcaaatcagg
gaaaaaattgagcgctatcaaacaattcacgaaattgaaaatcaagcaatggcccaattc
cctttgccagaaggaaatgatgaaaaattaaaacggcgaatgttgctagaattatcaacg
tgtttaaaaaatgttgttcgcgaagaaattcgtcatcaaattacagtacaaaaattacgc
ttagataatcgtcagttagatgaaataagaccattagctagtgaaattgatttattacca
attgtccatggtagtgctttatttaccagaggagaaacacaagttttatctgttgttact
ttaggagcattgggggaaaatcaaattattgatggtattaccgatgaagaaggcaaacgt
tttatgcatcattataatttcccacctttttcagttggagaaactgggcggatgggagcg
ccatcacggcgtgaaattggtcatggggcccttggtgaaaaagcgttattacaaatcctt
ccaagtgaaaaagagttcccatatactattagaattgtttcagaagtattagaatcaaat
ggttcaacttcgcaagcggcgatttgtgcttcaacattagcgttaatggcagctggggtc
ccaattaaaacccctgttgttgggatagcaatgggtctggtaaaaaatgatgaaaattac
acaattttaacagatattcaaggaatggaagatcatttaggggatatggactttaaagtt
gccggaacaaaagatgggatttgtgctttacaaatggatattaagattagtggtattacc
gaagaaattttatgagaggctttattggcagcaaaaaaagcgcgcgcaacattattagcc
aatattttagcaacaattccagctccgcgaacagaattggccccaactgctcccaaaatg
aaaacatttatgattccagttgaaaagattcgtgatgtaattggaacgggtggaaaaact
attactagcattattgaaaaatcaaataatgttaaaattgatattgaagatgatggacaa
gtgacaatttatcataaagattatgaggcgataaataatgcctatcaattaattaaagat
atcgttttccctgttgaaataaatcaagaattaattggaactgttgttaaaattgaaaaa
tttggtgcctttgttaatttaaaagaaaatttagatggattaattcatatttctaagcta
gcagatcatcgggttgaaaaaaccgaagatattgttaatgttaatgacaaagtaaaagtg
aaagtaattgaacttgatagtaaaggaaaaattaaacttcagttattagaagtaataaca
agcaaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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