KEGG   Spirochaeta thermophila DSM 6192: STHERM_c06530
Entry
STHERM_c06530     CDS       T01315                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sta  Spirochaeta thermophila DSM 6192
Pathway
sta03410  Base excision repair
sta03430  Mismatch repair
sta03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sta00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    STHERM_c06530
   03430 Mismatch repair
    STHERM_c06530
   03440 Homologous recombination
    STHERM_c06530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sta03400]
    STHERM_c06530
DNA repair and recombination proteins [BR:sta03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     STHERM_c06530
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     STHERM_c06530
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      STHERM_c06530
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1
Other DBs
NCBI-ProteinID: ADN01612
UniProt: E0RR34
Position
733427..735556
AA seq 709 aa
MARWQKPPIDKNRVLGISERFGLDLLTSTILVRRGLDSPEELSFFMERHLRYLHNPFLFE
DMPLAVERVIQAKEEGERILVFGDRDADGISSTVLLTEFLEEMGMEVDWRVPMGDEQYGL
SLDAVEEHARNGGSLIITVDCGISSVREITRAAELGLDVIVLDHHEPKEELPPAYAIIDP
KVEGSGYPFRDLAGCGVVAKFLWALTFGLSDHFNQEVSLLNIRPGNEAYIVEVIQTENLI
ELDRVQESIVPGMVPVDRTRIYDLIAQSPIYVYDLPLQQRLFQAAFGRGVELQAFDLKPL
VERLYPSLKGRSLLRLKDRSRGALYREKPPEEIDVLFSLFQAVLMEETGVLRSMERVMDL
VGLGTLADLMPLRNENRILVREGLVRLSDPERPGLRALMARQKLLGKKLAPRDVLWQVGP
IINASGRMGSPDVAVRLLLCRDPAEAEALGDELIKLNDERKRLGEDLWQRIQPQAYESFT
RFKEKFVLVYHDAVQRGVTGILAARLAQKFKVPAAILAPLEEEGRLVGSLRSFQGVGVLN
LLTACEDLLMEYGGHDFAAGFSLHPERLEEFIERLVEVVEDLGLPLRGEEPLTIDAEIPP
SWMTPDIMKVVEFFAPYGEQNPPLRLLYREAVVRDIQFIGRNGQPHIKFHLAMGGALWPA
VYWGASDKVNVEFSEDDEVDVVFTPTWNTYQNQETIQLTVVDMRRCEGS
NT seq 2130 nt   +upstreamnt  +downstreamnt
gtggcacgctggcagaaaccgcctattgacaagaacagggtgctcggaatctccgagcgg
ttcggactcgaccttctcacctccaccatcctggtgaggagggggctcgactcacccgag
gaactctccttcttcatggaacgacacctccgataccttcacaacccgttcctgttcgaa
gatatgccccttgctgtggaacgagtgatccaggcgaaggaggagggggaacgtatactc
gtcttcggggacagggatgcggacgggatcagctccaccgtgctcctcacggagttcctc
gaggagatgggtatggaggtggactggcgggtgcccatgggcgacgaacagtacggcctc
tccctcgatgcagtggaggaacacgcccggaacgggggatcgctcatcatcaccgtggac
tgcggtatctccagtgtgcgtgagatcacgagagccgccgagctcggtctcgacgtcatc
gtcctcgaccaccacgaacccaaggaggaactccctcccgcctacgccatcatcgatccc
aaggtcgagggatccgggtacccgttccgcgacctggccggatgcggcgtggtggcgaag
ttcctctgggccctcaccttcggtctctccgaccacttcaaccaggaggtgagcctcctc
aatatacggccgggcaacgaggcctacatcgtggaggtgatacagaccgagaacctcata
gagctcgacagggtgcaggaatcgatcgtaccgggcatggtcccggtggaccgcaccaga
atctacgatctcatcgcccagtcgcccatctatgtgtacgatctgccgctccagcagcgg
cttttccaggctgcgttcggcagaggagtggaactccaggccttcgacctcaagccgctg
gtggaacgcctctacccctcgttgaagggcaggagcctcctcaggttgaaggacagatcc
cggggcgccctctacagggagaagcctcccgaggagatcgacgtgctcttctccctcttt
caggccgtactcatggaggagaccggggtgctccgctccatggaacgggtgatggacctg
gtggggttggggacgctcgccgatctcatgcccctcaggaacgagaaccgaatcttggtg
agggaggggctcgtccggctctccgatccggagcggcctgggctcagggccctcatggca
cgtcagaaactcctgggcaagaagctcgctccccgtgacgtgctctggcaggtggggcct
atcatcaacgcctcggggcggatgggatctccggacgtggcggtgcgtctcctcctctgc
cgggaccctgccgaggcggaggccctgggcgatgagctcatcaagctcaacgacgagcgg
aagcggctcggggaggacctgtggcagaggatacagccccaggcctacgagagtttcacc
cggttcaaagagaagttcgtgctcgtgtatcacgatgcggtccagcggggcgtcaccggg
atcctcgcggcccggctcgcccagaagttcaaggtacccgccgccattctggcccccctc
gaagaagaggggaggctcgtggggtccttgagaagcttccagggagtgggggtgctcaat
cttctcacggcgtgcgaagatctcctcatggagtatggcggtcacgacttcgccgcagga
ttctccctgcaccccgaacgcctggaggaattcatcgagcgactcgtcgaggtggtggag
gacctgggtcttccgcttcgcggtgaggagcctctcaccatcgacgccgagataccgccc
tcatggatgacgcccgatatcatgaaggtggtggagttcttcgccccgtacggggagcag
aatccccccctcaggttgctctaccgggaggccgtggtccgtgacatccagttcatcggc
cgcaacgggcaaccgcacatcaagttccacctcgccatgggaggtgccctctggcctgcc
gtgtattggggggcgtcggacaaggtgaacgtggagttttccgaggacgacgaggtggat
gtggtattcacccctacgtggaacacctatcagaaccaggagaccatccagctcacggtc
gtggacatgaggcgatgcgaaggatcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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