KEGG T00212: str0625

Streptococcus thermophilus CNRZ1066: str0625

Entry

str0625           CDS       T00212

Symbol

rnr

Name

(GenBank) exoribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

stc Streptococcus thermophilus CNRZ1066

Pathway

stc03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:stc00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    str0625 (rnr)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stc03019]
    str0625 (rnr)
   03016 Transfer RNA biogenesis [BR:stc03016]
    str0625 (rnr)
Enzymes [BR:stc01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     str0625 (rnr)
Messenger RNA biogenesis [BR:stc03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     str0625 (rnr)
Transfer RNA biogenesis [BR:stc03016]
Prokaryotic type
  tRNA degradation factors
   str0625 (rnr)

SSDB

Motif

Pfam:

RNB OB_RNB CSD2 S1 RNase_II_C_S1 TnpV

Other DBs

NCBI-ProteinID:

AAV62221

Position

585632..588085

AA seq 817 aa
MKESIINYLKEHGKSSVNDIAHALNHAGGEKFPQLIKVISAMERKRQLRFNRDGSVSLRP
KKEHPNQVTVEGVFHANKNGFGFLHVDDSEDDMFIGRNDVGHAIDGDTVAAVIKKPADRL
RGTMAEARVVEIVERSLKTVVGKFILNDEKEPYVGYIKSKNQKIQQPIYIKKGPVALEGT
EIIKVDIEKYPNRHHDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAV
PDAPSQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTE
GSALNREAAARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTLSAIMEITPKGKVINH
KICQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALN
FDTSEARILVNDKGMPVDIVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEE
PKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQAR
YSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATS
SSTLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTVEGLVHITT
LPEFYNYNERTMTLQGEKSGKTFRVGQPIRVKLIRADKETGDIDFQYLPSEYDITEKVDH
KARQEREEKAKSFRNRGPRRDRQNGDFESRGKRVNKRSGQDSSGYKGSYDQKRKSSKKPD
KRKNQNRPHNDNKGRESSRRKKKENKPFYKDVAKKRK

NT seq 2454 nt +upstreamnt +downstreamnt
atgaaagaatctattataaattatttgaaagagcatgggaaatccagtgtaaatgacatt
gcccacgctcttaatcacgctggcggtgaaaagttcccacagcttatcaaagtcatatca
gctatggaaaggaagagacagttgcgctttaatcgagacggctctgtatccttacgtcct
aagaaagaacatcccaatcaggttactgtagagggtgtttttcatgccaataagaatggt
tttggtttcttacatgtcgatgacagtgaggatgacatgtttattggtcgtaatgacgtt
ggccatgccattgatggtgacactgttgccgcagttattaagaagccagcagatcgtttg
cgtgggacaatggctgaagcaagagttgttgaaattgtcgaacgctctcttaaaacggtt
gtcgggaaatttatcctcaatgacgagaaagaaccttatgtaggttacattaagtctaag
aatcaaaaaattcagcaaccaatctatatcaagaaaggaccagttgctcttgaggggact
gagattattaaggttgatattgaaaaataccctaaccgccatcacgattattttgtagga
agtgttcgagatattattggtcatcaaggagatgctggtattgatgtcttggaagttttg
gaatcaatggatattgtttcggagtttccagaagatgttatggctgaagcagaggctgtg
ccggatgcacctagtcaagaagatctaattggtcgtgttgaccttcgtcaagaagtgacc
ttcaccattgatggagctgatgccaaggacttggatgatgcagttcatattaaacgttta
ccaaatggtaactatgagctaggtgtccacattgcagatgtgtcttattatgtcacagag
ggttctgccctcaaccgtgaggctgcagcgcgtggtacttctgtttatgtgacagaccgc
gtggttccaatgttgcctgagcgtctttcaaatggtatttgttctctaaatcccaatgtt
gaccgcttgactctgtcagctattatggagattactccaaaaggcaaggtgattaatcat
aagatttgccaatctgtaattaagacaaccttccgtatgacctatagtgatgtcaatgaa
atgttggctggaaatccagaaaagattgaacagtttaagcctatcatggattctgtgtca
gctatggcagaacttcataagattttagaagatatgcgcgaacgtcgtggtgcccttaac
tttgatacatctgaagctcgtatcttggttaatgataagggaatgccagttgatatcgtg
gtgcgtgaacgtgggacggctgagcgaatgattgagtcctttatgttggctgccaatgaa
tgtgtggcagagcatttcgctaaggctaagttgccatttatttaccgtattcacgaagag
cctaaagcggagaaattgcaacgctttatggattatgcttctatctttggtattcaaatc
aaaggaacagctaataagatggatcagctagacttacaagatttcatggcgcgagttcaa
ggcaaacctggagcagaagtcatgaatatgatgttgcttcgttcaatgcaacaagctcgt
tattcagaacacaatcatgggcactatggacttgcggctcagtattatactcacttcacc
agtccgatccgtcgttacccagaccttttggttcaccgaatgattcgtgagtacaccaac
aatatgtctcaagaaacgcgtgaacactttgaagaggttattccagagttagctacttca
tcttcaacccttgagcgtcgtgctattgacgctgaacgtgtcgttgaagccatgaaaaaa
gcagagtacatggaagagtttgttggtcaagaattcgatggtattgtcggaagtgtggtt
aaattcggtatgtttgtggaattgccaaataccgttgaaggtttggttcatatcacaaca
cttccagaattctacaattacaatgaacgcaccatgacccttcagggtgaaaaatctggt
aagactttccgtgttggccaacctattcgagttaagttaattcgtgcagataaggagact
ggagacattgatttccaataccttccaagtgagtacgatatcactgaaaaagtagatcac
aaggctcgtcaggaacgtgaagagaaggctaagtccttccgtaatagaggaccacgccga
gatcgtcaaaatggtgatttcgaaagtcgtggtaaacgtgtaaataagcgtagcggtcaa
gatagtagtggttacaaaggctcttatgatcaaaagcgtaagtcatctaagaaaccagac
aagcgtaagaatcaaaaccgtcctcataatgataataagggacgtgagagtagtcgtcgt
aagaaaaaagaaaacaaacctttctacaaggacgttgctaaaaaacgaaaatag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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