KEGG   Stenotrophomonas sp. MYb57: CLM74_03150
Entry
CLM74_03150       CDS       T05384                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
stem  Stenotrophomonas sp. MYb57
Pathway
stem00740  Riboflavin metabolism
stem01100  Metabolic pathways
stem01110  Biosynthesis of secondary metabolites
stem01240  Biosynthesis of cofactors
stem02024  Quorum sensing
Module
stem_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:stem00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    CLM74_03150 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CLM74_03150 (ribD)
Enzymes [BR:stem01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     CLM74_03150 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     CLM74_03150 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam
Other DBs
NCBI-ProteinID: AVJ31849
Position
708335..709420
AA seq 361 aa
MSISFTVLDHLHMAAALRLAERGAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVF
ALREAGTEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDL
LRDAGIEVAEGLMAAQARELNKGFLSRVERGRPWLRVKLAASLDGRTAMADGSSKWITGP
AAREDVQHWRARAGAILTGADTVIADDPMLTVRLADTEVMPPLRVVLDSRLRSLECSRVR
EGGAPTLYLHDAMISPPDAADAAFASVAVRHGRLDLGAVLALLAERGINEVHTEAGATLA
GALVRGGWVDELLMYQAPTLLGDSGRPLLADLGIDVMDQQRRLRVVDQRQVGEDLRLLLR
V
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgagcatatcgttcaccgtccttgaccacctgcacatggccgccgcattgcggcttgcc
gaacgcggtgcctataccacccgtcccaatccgatggtcggctgcgtgatcgcccatggc
gagcgcgtggtcggccagggctggcaccagcgcgctggcggcccgcatgccgaagtattc
gccttgcgcgaggccggcaccgaagcgcgtggtgccaccgcctacgtcaccctggaaccc
tgcgcgcattacggccgtaccccgccgtgcgcactggcgctgatcgaagccggcgtgtcg
cgcgtggtcgcggcaatgcgcgacccgttcccgaaagtcgatggcggtggcttcgacctg
ctgcgtgacgctggcatcgaggtcgccgagggcttgatggcggcacaggcgcgggaactc
aacaagggcttcctgtcgcgcgtggagcgcggccgtccgtggctgcgggtgaagctggcc
gccagcctcgatggccgtaccgcgatggccgacggcagctcgaagtggatcaccggcccc
gccgctcgcgaagatgtgcagcactggcgcgcgcgcgctggcgcgatcctcaccggcgcc
gacaccgtcatcgccgacgacccgatgctgaccgtgcgcctggctgacactgaagtcatg
ccgcccctgcgcgtcgtcctcgattcccgcctgcgctcgctggaatgcagccgtgtgcgc
gagggtggggcgcccacgctgtacctgcacgatgcaatgatcagcccgcccgacgccgcc
gacgcggcctttgccagcgtagccgtccgccacggtcgccttgatctgggcgcggtgttg
gcactgctggccgagcgcggcatcaacgaggtgcacaccgaagccggtgcaacgctggcc
ggcgcgctggtgcgtggtggctgggtcgacgaactgctgatgtaccaggcgccaacactg
ctgggcgacagcggccgcccgttgctggccgacctcggcatcgacgtgatggaccaacag
cgccgcctgcgcgtggtcgaccagcgccaggtgggtgaggatctgcggttgctgctgcgg
gtgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

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