KEGG   Stenotrophomonas sp. ASS1: MG068_06115
Entry
MG068_06115       CDS       T06051                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
stes  Stenotrophomonas sp. ASS1
Pathway
stes03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:stes00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MG068_06115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stes03019]
    MG068_06115
   03009 Ribosome biogenesis [BR:stes03009]
    MG068_06115
Messenger RNA biogenesis [BR:stes03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     MG068_06115
Ribosome biogenesis [BR:stes03009]
 Prokaryotic type
  rRNA helicases
   MG068_06115
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 DUF6702
Other DBs
NCBI-ProteinID: QBL40114
Position
1324389..1326347
AA seq 652 aa
MSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDTRINKFTSRISETLGAGGLDFYRQLLERFENEQNVP
AIEVAAALAKMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFER
GPRRDDAEGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR
FIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRALAPGEDTNPAPRPFKPRF
DRRGPGGPGGPRRGGPGGPGGHGGDRGGDRGGDRDSRPPRRDGFKPRGPRSF
NT seq 1959 nt   +upstreamnt  +downstreamnt
atgtcccaagattcccaagcgccgctgcagttcgcgcagctcggcctgtccgagcccgtg
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccagaccggcaccggcaagacc
gcagcgttcgcgctgccggttctgtccaacatcgatctgcagcagatcaagccgcaggcc
ctgatcctggcgccgacccgcgaactggccatccaggttgccgaggcgttccagtcctat
tcgtcgaagatcccgggcttccgcgtgctgccggtgtacggcggccagccgtacggccag
cagctgtcggccctgcgccgcggcgtgcacatcgtggtcggtacccccggccgcgtgatc
gaccacctggaccgcagcactctggacctgtccgagctgaagacgctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaagccgtgctgaagaagctg
ccggagcagcgccaggtggccctgttttcggccaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgttactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggc
accgaagaactggccagcaagctgcaggcccgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgtgagcgcaccatcgccatgctgaaggaaggcaagctggac
atcctggtcgccaccgacgtggctgcccgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggt
cgtgccggccgcagcggcgaggcgatcctgttcgccaccccgcgcgagaagggcatgctg
cgccagatcgagcgcgccacccgccagccgatcgaagagatgcagctgccgagtgtggaa
gcggtcaacgacacccgcatcaacaagttcacctcgcgcatcagcgaaaccctcggcgcc
ggtggcctggacttctaccgccagctgctggagcgtttcgagaacgagcagaacgtgccg
gccatcgaagtggctgccgcgctggccaagatgctgcagggtgacaccccgttcctgctg
cagccgccggtgcgtgccccgcgtgaagagcgcgcaccgcgcgaacgcttcgaccgtggt
gaccgtccggaacgtggcgatcgcttcgaccgcaacgagcgtggtccgcgcttcgagcgt
ggcccgcgccgcgacgacgccgaaggtggcttcgagcagcgtccgcgccgtgaggttccg
ccgcgtggtgcgccggagcagggcatggagacctaccgcatttcggtcggccaccagcac
ggcgtgaagccggccaacatcgttggcgccattgccaacgaagccggtctggaaagccgc
ttcatcggccgcatcgacatccacgacgacttctcgctgctggacctgccggcacagatg
ccgccggacgtgctgtcgcacctgcagaaggtgtgggtgtccggccagcagctgcagatg
cgtgcgctggctccgggtgaagacaccaacccggccccgcgtccgttcaagccgcgcttc
gacaggcgtggtccgggcggcccgggtggcccgcgtcgcggtggcccgggcggtccgggt
ggccacggtggcgaccgcggcggtgaccgcggcggtgaccgcgacagccgcccgccgcgt
cgtgacggcttcaagccgcgcggcccgcgcagcttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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