KEGG   Symbiobacterium thermophilum: STH1512
Entry
STH1512           CDS       T00196                                 
Symbol
dnaE3
Name
(GenBank) DNA polymerase III alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
sth  Symbiobacterium thermophilum
Pathway
sth03030  DNA replication
sth03430  Mismatch repair
sth03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sth00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    STH1512 (dnaE3)
   03430 Mismatch repair
    STH1512 (dnaE3)
   03440 Homologous recombination
    STH1512 (dnaE3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sth03032]
    STH1512 (dnaE3)
   03400 DNA repair and recombination proteins [BR:sth03400]
    STH1512 (dnaE3)
Enzymes [BR:sth01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     STH1512 (dnaE3)
DNA replication proteins [BR:sth03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     STH1512 (dnaE3)
DNA repair and recombination proteins [BR:sth03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     STH1512 (dnaE3)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger HHH_6 HHH_3 DNA_pol_A_exo1 T2SSK DEDDh_C DNA_pol3_a_NII tRNA_anti-codon RNase_H_2 PHP_C DUF655 DUF4027 DnaX_C
Other DBs
NCBI-ProteinID: BAD40497
UniProt: Q67P96
Position
1648248..1652675
AA seq 1475 aa
MSPQSDWLSLIDVAGLPPQVQSFLAGARPVRVVVNRRRRTVALHLASPVRLPLDDRPTLA
RAVAEQCLGGLAASVTVVPVRDPDPQADASERVGEAWPEVLLQLKQALPLVNGLLDRAEW
RVEAATLVVELPTAAQAEVVEHRGVVPVLERLIRQETGCSLQVRVTARPVPRAERVEPPT
TVPDDPFADAEEEVPLPPEPIPEEPAFADEYFEQWMQRQSAFGKKEAAAAPPPSEGVLKG
RAIPADAPVRSIRTITEEENKVVIEGEVVGLDTRDLKSGRQLIAFGVCDLLRSEPGEFGD
TLPVKLFRDPQKDPDYLAVLKNGTWVKVRGNVQLDKFSGELTMLADDVVVGKRPTREDTY
EGPMKRVELHAHTTMSAMDALIDPAELVKTAVRWGHKAVAITDHGVVQAFPAASHVKVPD
DFRVIYGCELFLVDDGTAVVQRPPKDVPLAGAEFVVLDIETTGFSPIGDDIIELGAVRCR
GGEIVDSFQSFVRPTKPVPPEVQKLTNITPDMLEGAPEAAEALRAFFQFVGDAIVVAHNA
QFDYSFLRYHRQKYLGEEFANPVLDTLTLARAVLPHMRSHSLAALTKELQVPLVDHHRAD
ADAKTAAMVLMKLLERAEGVETVADLNRLTKGINVEQLRPYHTTVLVKTQAGMKNLYKLI
SLSHIEYFNRTPRVPRSELEKHREGLLVGSSTYGGQLFDALIRGVPDEELEQMASWYDYL
EILPRDCLAFLLESGQVNSEEQLLSLNRRIYELGKKLGKPVCAVSDAHFLDPHQQVFRRI
LKHGIGFRDEYDRPFYLRTTQEMLDEFAYLGEQAAYEVVVENPNAIAAQIEKVKVVPDKL
HPPVLEGSVEETRRLSWEKVKRVYGDPVPEKIAHRLEKELNAIIGNGFAVSYYISHLLVK
KSMELGYLVGSRGSVGSSFVAWAMDITEVNALPPHYICPQCKYLEWHDDGKTGSGFDLPR
KDCPRCGTPLDRDGQDIPFETFLGFKGDKVPDIDLNFSGEVQNRIQKYSEELLGGEKYVF
KAGTVGTIAEKTAFGMVRAWLEESRITGVREAHIGYLAQGLAGVKRTTGQHPGGMVVCPV
GMEIEEVTPVQYPADDRSSGVKTTHFDYHSFEQALMKLDILGHDDPTMLKMLQDLYREKK
GDPDFDVRKVPVDDPQVLALFSPGGNRVLGIEDGKLQFDLGTIVLPEMGTRFVRQMLMET
SPRNFSDLVRISGLSHGTDVWTNNAQELVKKGIPFQDVIGCRDDIMVQLIYWGVEPATAF
KIMESVRKGKGLTPEMEETMRACNVPDWYIWSCKQIKYMFPKAHAAAYVLSCLRIAWFKV
HEPLLFYAAYLSVRAGSVDANLLVAGPEAVRRYVQEIEAKGKDATPKEKDSLTEYELVEE
AFLRGIRFNRVDLYRSEATRYLIDGENTLLCPFNALPGLGDSAAQAIVEARAQGPFHSKE
DLKNRARLNKAVMELLEGHGCLEGLPEGNQLVFGF
NT seq 4428 nt   +upstreamnt  +downstreamnt
atgtcaccgcagtccgactggctctcgctcatcgacgtcgccgggcttccgccgcaggtg
cagtccttcctggccggcgcccgccccgtgcgggtcgtggtgaaccggcgcaggcgcacc
gttgccctgcacctggccagcccggtccgtctcccgctggacgaccggccgacgctggcc
cgggcggtggcggagcagtgcctggggggccttgccgcctcggttacggtggtgccggtg
cgcgaccccgacccgcaggccgacgcgtccgagcgggtgggggaggcctggccggaggtc
ctgctgcaactgaagcaggcgctccctctggtcaacggtctcctggaccgggcggagtgg
cgtgtggaggccgcgaccttggtggtggagctgcccaccgccgcacaggctgaggtggtg
gagcaccggggcgtggtgccggtgctggagcggctgatccggcaggagaccggctgcagc
ctgcaggtgcgggtgacggcgcgcccggtcccgcgggcggagcgggtggagccgccgacc
accgttcccgacgacccgttcgccgatgccgaggaggaggttcccctgcccccggagccg
atccccgaggagccggccttcgcggacgagtacttcgagcagtggatgcagcgccagtcg
gcgttcggcaagaaggaggccgcggcggcgcccccgccctccgagggcgtgctgaagggc
cgcgcgatccctgccgatgcgccggtgcggtcgatccggacgatcacggaagaggagaac
aaggtcgtcatcgagggcgaggtcgtggggctggacacccgggacctgaagagcggccgg
cagctcatcgccttcggcgtctgcgacctgctccggtccgagcccggcgagtttggcgac
accttgcccgtcaagctcttccgggatcctcagaaggaccccgactacctggccgtgctc
aagaacggaacgtgggtcaaggtccggggcaacgtgcaactggacaagttctccggtgag
ctgacgatgctggccgacgacgtggtggtgggcaagcggccgacgcgggaggacacctac
gaggggcccatgaagcgggtggagctgcacgcccacaccaccatgtcggccatggacgcc
ctgatcgatccggccgagctggtgaagacggcggtgcggtggggccacaaggcggtggcc
atcaccgaccacggcgtcgtgcaggcgttcccggcggccagccacgtgaaggtgccggac
gacttccgggtgatctacgggtgcgaactctttctggtcgatgacggcacggcggtggtc
cagcggccgccgaaggacgtgccgctcgcaggggccgagttcgtcgtgctggacatcgag
acgacgggcttctccccgatcggcgacgacatcatcgagctgggcgcggtgcgctgccgc
ggcggggagatcgtcgactcgttccagagcttcgtgcggccgaccaagccggtgccgccc
gaggtgcagaagctgaccaacatcacgccggacatgctggagggcgccccggaggcggcg
gaggccttgcgcgccttcttccagtttgtgggcgacgccatcgtcgtggcccacaacgcg
cagttcgactactcgttcctgcgctaccaccggcagaagtacctgggcgaggagttcgcc
aacccggtgctggacaccctgacgctggcccgggccgtgcttccgcacatgcgcagccac
agcctggcggccctcacgaaggagctgcaggtgccgctggtggaccaccaccgggccgac
gccgacgccaagaccgccgcgatggtgctgatgaagctgctggagcgcgccgagggggtc
gagacggtggccgacctcaaccgtctgaccaagggcatcaacgtcgagcagctccggccg
taccacacgaccgtcctcgtcaagacccaggcggggatgaagaacctgtacaagctgatc
agcctgtcccacatcgagtacttcaaccgcacgccgcgcgtgccgcgctcggagctggag
aagcaccgggaggggctgctcgtcggctcgtccacctacggcggccagctgttcgacgcc
ctgatccggggcgtgccggacgaggaactggagcagatggcctcctggtacgactacctg
gagatcctgccccgggactgcctggccttcctgctggagtccggccaggtcaactccgag
gaacagctgctctcgctcaaccgccggatctacgagctggggaagaagctgggcaagccg
gtctgcgcggtgtcggacgcacatttcctcgacccgcaccagcaggtcttccgccgcatc
ctgaagcacggcatcggcttccgggacgagtacgacaggccgttctacctgcgcacgacc
caggagatgctggacgagttcgcctacctgggcgagcaggccgcctacgaggtggtcgtg
gagaaccccaacgccatcgccgcccagatcgaaaaggtgaaggtggtgccggacaagctc
cacccgccggtgctggaggggtcggtggaggagacccgccgcctctcctgggagaaggtg
aagcgggtctacggcgacccggtgcccgagaagatcgcccatcggctggagaaggagctc
aacgcgatcatcggcaacggcttcgccgtttcgtactacatctcgcacctgctggtgaag
aagtcgatggaactcgggtacctcgtggggtcccggggttcggtgggctcctccttcgtc
gcctgggcgatggacatcaccgaggtcaacgccctgccgccccactacatctgcccccag
tgcaagtacctggagtggcacgacgacggcaagaccggatcgggcttcgacctgccccgg
aaggactgcccccgctgcgggaccccgcttgaccgcgacggccaggacatccccttcgag
acgttcctgggcttcaagggcgacaaggtgcccgacatcgacctcaacttctccggcgag
gtgcagaaccgcatccagaagtactccgaggagctgctcggcggggagaagtacgtcttc
aaggcgggcaccgtgggcaccattgccgagaagaccgccttcggcatggtgcgggcgtgg
ctggaggagagccggatcaccggcgtgcgggaggcgcacatcggctacctggcccagggc
ctggccggggtgaagcgcaccacgggccagcaccccgggggcatggtggtctgtccggtg
gggatggagatcgaggaggtcaccccggtgcagtatcccgcggacgaccgctcctccggc
gtgaagacgacccacttcgactaccactcgttcgagcaggccctgatgaagctggacatc
cttggccacgatgacccgaccatgctcaagatgctgcaggacctctaccgggagaagaag
ggcgatccggacttcgacgtgcggaaggtgccggtggacgacccgcaggtgctggccctc
ttcagccccgggggcaaccgggtgctgggcatcgaggacggcaagctccagttcgacctg
ggcaccatcgtgctgcccgagatgggcacccggttcgtgcggcagatgctgatggagacc
agcccgcggaacttctcggacctggtgcgcatctccggcctctcccacggcacggacgtg
tggaccaacaacgcccaggagctggtgaagaagggcattcccttccaggacgtcatcggc
tgccgtgacgacatcatggtgcagctgatctactggggtgtcgagcctgccaccgcgttc
aagatcatggagtcggtgcgcaagggcaaggggctcaccccggagatggaggagaccatg
cgggcctgcaacgtgcccgactggtacatctggtcctgcaagcagatcaagtacatgttc
ccgaaggcccacgcggcagcctacgtcctctcctgcctgcgcatcgcctggttcaaggtg
cacgagccgctcctgttctacgccgcgtacctgagcgtccgggccggatcggtggacgcc
aacctgctggtggcggggcccgaggcggtgcgccgctatgtccaggagatcgaggcgaag
ggcaaggacgccacgcccaaggagaaagactccctcaccgagtacgagctggtggaggag
gccttcctgcggggcatccggttcaaccgggtggacctgtaccgctcggaggccacccgc
tacctgatcgacggggagaacaccctgctttgtccgttcaacgcgctgcccgggctgggc
gacagcgctgcccaggcgatcgtggaggccagggcgcagggtccgttccactcgaaggag
gacctgaagaaccgggcgcggctcaacaaggccgtcatggagctcctggagggccacggc
tgcctggaggggctgcccgagggcaatcagctggtgttcggcttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (50)   

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