KEGG   Symbiobacterium thermophilum: STH3047
Entry
STH3047           CDS       T00196                                 
Symbol
rpoA
Name
(GenBank) RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
sth  Symbiobacterium thermophilum
Pathway
sth03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sth00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    STH3047 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sth03021]
    STH3047 (rpoA)
   03400 DNA repair and recombination proteins [BR:sth03400]
    STH3047 (rpoA)
Enzymes [BR:sth01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     STH3047 (rpoA)
Transcription machinery [BR:sth03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     STH3047 (rpoA)
DNA repair and recombination proteins [BR:sth03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      STH3047 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5 RAD51D_N Mg_chelatase_C Stathmin
Other DBs
NCBI-ProteinID: BAD42029
UniProt: Q67JX1
Position
complement(3260310..3261257)
AA seq 315 aa
MIGMEKPKIETVVLAEDNSYGKFVVEPLERGYGITLGNSLRRILLSSLPGAAVTSVKIDG
VLHEFSTLPGVVEDVTDIILNLKQLSLRMHSDEPKVLRLHAEGEGEVTAGDIHTDADVEI
LNPDLHIATLDKGGRLIAEITVSKGRGYVPADQNKTPDMPIGVIPVDSIFSPIRRVNYTI
EHTRVGNKTNYDKLTLEVWTNGAIRPDEACSWAAKILKEHLELFISLTEDADEIEVMQEK
EDDERNKLMEMTIEELDLSVRSYNCLKRAGINTIAELVSKTDEEMMKVRNLGKKSLEEVK
TKLAAFGLSLRQPDD
NT seq 948 nt   +upstreamnt  +downstreamnt
atgatcggaatggaaaagcccaagattgagaccgtggtgctggcggaggacaacagctac
ggcaagttcgtggtggagcctctggagcgcggctacggcatcacccttggcaactccctg
cggcggatcctgctctcttccctgccgggcgccgcagtcacctctgtgaagatcgacggc
gtgctgcatgagttttccacgctccccggtgtggtcgaggacgtcacggatatcatcctc
aacctcaagcagctctcgctccggatgcacagcgacgaaccgaaggtcctgcgcctccac
gcggagggcgagggcgaggtcaccgcgggggacattcatacggacgccgatgtggagatc
ctcaacccggacctgcacatcgccaccctggacaagggcggccggctcatcgccgagatc
accgtcagcaaggggcggggctacgtgccggccgaccagaacaagaccccggacatgccc
atcggcgtgatccccgtcgactcgatcttctccccgatccgtcgggtgaactacaccatc
gagcacacccgcgtcggcaacaagaccaactacgataagctcaccctggaggtctggacc
aacggggccatccggcccgacgaggcctgctcctgggcggcgaagatcctcaaggagcac
ctggagctcttcatctcgctcaccgaggacgccgacgagatcgaggtcatgcaggagaag
gaagacgacgagcggaacaagctgatggagatgaccatcgaagagctggatctctccgtt
cgttcgtacaactgcctgaagcgggcgggcatcaacaccatcgcggagctggtctccaag
accgacgaagagatgatgaaggtccgcaacctgggcaagaagtcgctggaagaggtcaag
accaagctggcggccttcggcctttcgctgcggcaacctgatgactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (43)   

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