KEGG   Symbiobacterium thermophilum: STH3085
Entry
STH3085           CDS       T00196                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sth  Symbiobacterium thermophilum
Pathway
sth03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sth00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    STH3085 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sth03021]
    STH3085 (rpoB)
   03400 DNA repair and recombination proteins [BR:sth03400]
    STH3085 (rpoB)
Enzymes [BR:sth01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     STH3085 (rpoB)
Transcription machinery [BR:sth03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     STH3085 (rpoB)
DNA repair and recombination proteins [BR:sth03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      STH3085 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RnfC_N Peptidase_M23
Other DBs
NCBI-ProteinID: BAD42067
UniProt: Q67JT3
Position
complement(3285098..3288850)
AA seq 1250 aa
MPKIVQAGRRQRLSFSRIDEVLEMPNLIELQRNSYQWFLREGLQEMFQDISPIQDFTGNL
VLEFIDYSLGEPKYSIEECKERDVTYAAPLRVRVRLINKETGEVKEQEVFMGDFPLMTPT
GTFIINGAERVIVSQLVRSPGVYFSEQIDPSGKKLFFATMIPNRGAWLEFESDVNDVIYV
RVDRTRKLPATVLLRALGFGSDQEILDAVGDSEYIRRTLEKDSTESEEEALIEIYKRLRP
GEPPAADNARQLLETLFFEPKRYDLMHVGRYRLNKKLALKRRIVGTSTVDRVVHPETGEV
LAEAGVQIDKRLAEKIDEAGVDALTVRLRDGGIVRVVANGRPDIRVKTIVRQDIVAVINY
MVSLFKGLGSVDDIDHLGNRRVRSVGELLQNQFRIGLARMERVIKERMTIQDVDIITPQA
LINIRPVVAAVKEFFGSSQLSQFMDQTNPLAELTNKRRLSALGPGGLSRERAGYEVRDVH
TSHYGRMCPIETPEGPNIGLIGALATFARINEYGFIETPYRKVDQESGRVTDEIVYLTAD
EEDENIIAQANEPLNPDGTFARDRVTCRYRDEILQVPPSQVDYMDVSPKQVVSIATALIP
FLENDDASRALMGSNMQRQAVPLLRTEAPYVGTGMEYRSAWDSGVCVIAENDGVVLRATA
SEVVVQYDDMQVKKYKLTKFTRSNQGTCMNQKPIVRAGDRVRKGDVIADGPSTDQGELAL
GRNVLVAYMCYEGYNYEDAIIINERLVREDVFTSIHIEEHECEARDTKLGPEEITRDIPN
VGEDVLKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDT
SLRVPHGESGIVVDVKVFTRENGDELSPGVNELVRVYMAQKRKISQGDKMAGRHGNKGVI
SVIVPEEDMPFMPDGTPIDIILTPLGVPSRMNIGQIMEIHLGWAAKTLGMYVASPVFDGA
NEQDIREMLLKAHLPPNGKTVLYDGKTGEPFDNEVTVGYKYMLKLHHLVDDKIHARSTGP
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVK
GENVPEPGVPESFKVLIKELQSLALDVKVLDESGNEIELRELDDEMDLSDRDLEIPTLGG
AELAKPAPDAQAGEESGEAGEESEGEPEEEDVEEIDVPLDPEELEKVAGALKNPVRAGRR
GAGGGLADDDQEMDEEDLFDEGDEDLADDVGLYRGRSRRLADDFGDEEEE
NT seq 3753 nt   +upstreamnt  +downstreamnt
atgccgaagatcgtgcaagctggcaggagacagcggctgagcttctcccggatcgatgag
gttctggagatgccgaacctgatcgagcttcagcgcaactcctatcagtggttcctgcgt
gagggcctgcaggagatgttccaggacatctcgcccattcaggacttcaccggcaacctg
gtgctggagttcatcgactacagcttgggcgaaccgaagtactcgatcgaggagtgcaag
gagcgggatgtcacgtatgccgctccgctgcgtgtccgggtccggctcatcaacaaggag
accggcgaggtgaaggagcaggaggtgttcatgggcgacttcccgctcatgacccccacc
ggcaccttcatcatcaacggcgcggaacgggtcatcgtctcccagctcgtccgctcgccc
ggggtctacttctccgagcagatcgacccctccggcaagaagctgttcttcgcgaccatg
atccccaaccggggcgcatggctggagtttgagtccgacgtcaacgacgtcatctacgtg
cgcgtcgaccggacccgcaagctgcccgcgaccgtcctgctgcgcgccctcggcttcggc
tccgaccaggagatcctcgacgccgtgggcgattcggagtacatccgccgcacgctggag
aaggacagcacggagtccgaggaggaggcgctcatcgagatctacaagcggctgcggccc
ggtgagccgccggctgcggacaacgcgcgccagctcctggagacgctgttcttcgagccg
aagcggtacgacctgatgcacgtgggccgctaccggctgaacaagaagctggccctgaag
cggcgcatcgtgggcacgtccaccgtcgaccgggtggtgcacccggagacgggggaggtg
ctggccgaggccggcgtgcagatcgataagcggctggccgagaagatcgacgaggccggc
gtggacgcgctgaccgtgcggctgcgcgacggcgggatcgtgcgcgtggtcgccaacggc
aggccggacatcagggtgaagaccatcgtccggcaggacatcgtcgccgtcatcaactac
atggtcagtctattcaagggcctgggcagcgtcgacgacatcgaccacctgggcaaccgg
cgcgtgcgctccgtcggcgagctgctgcagaaccagttccgcatcggcctcgcccggatg
gagcgcgtcatcaaggagcgcatgaccatccaggatgtggacatcatcacgccccaggcg
ttgatcaacatccggccggtggtcgccgcggtgaaggagttcttcggctcctcgcagctc
agccagttcatggaccagaccaaccccctggccgagctgaccaacaagcggcgcctctcg
gccctgggccccggcggcctctcccgggagcgggccgggtacgaggtgcgcgacgtgcac
acctcccactacggccgcatgtgccccatcgagacgccggaaggtcccaacatcggcctg
atcggcgccctggccaccttcgcccgtatcaacgagtacggcttcatcgagacgccgtac
cgcaaggtcgaccaggagagcggccgggtcaccgatgagatcgtctacctcaccgcggat
gaggaggacgagaacatcatcgcccaggccaacgagccgctcaatccggacggcaccttc
gcccgggaccgggtcacctgccgctaccgggacgagatcctgcaggtgccgcccagccag
gtggactacatggacgtctcgcccaagcaggtggtgtccatcgccacggcgctcatcccg
ttcctggagaacgacgacgcgtcgcgggcactgatgggctccaacatgcagcggcaggcc
gtgccgctcctgcgcaccgaggccccgtacgtgggcaccggcatggagtatcgctccgcc
tgggactcgggcgtctgcgtcatcgccgagaacgacggcgtcgtgctgcgggcgacggcc
tccgaggtcgtcgtgcagtacgacgacatgcaggtgaagaagtacaagctgaccaagttc
acccggtccaaccagggcacctgcatgaaccagaagccgatcgtgcgcgccggcgaccgg
gtgcgcaagggcgacgtgatcgcggacgggccgtccaccgaccagggtgaactggccctc
ggccgcaacgtgctggtcgcctacatgtgctacgagggctacaactacgaggacgccatc
atcatcaacgagcggctcgtgcgcgaggacgtcttcacctcgatccacatcgaggagcac
gagtgcgaggcgcgcgacaccaagctggggcccgaggagatcacccgggacatccccaac
gtcggcgaggacgtgctgaaggacctggacgagcgcggcatcatccgcatcggcgccgag
gtgcggccgggcgacatcctggtcggcaaggtcacgcccaagggcgagaccgagctcacg
gctgaggagcggctgctgcgggcgatcttcggcgagaaggcgcgggaggtccgcgacacg
tcgctgcgggtgccgcacggcgagtcgggcatcgtcgtggacgtcaaggtcttcacccgt
gagaacggcgacgagctctcgcccggcgtgaacgagctggtgcgggtctacatggcccag
aagcgcaagatcagccagggcgacaagatggccggccgccacggcaacaagggcgtcatc
tccgtcatcgtcccggaggaagacatgcccttcatgcccgacggcacgccgatcgacatc
atcctgacgccgctgggcgtgccctcccgcatgaacatcggccagatcatggagatccac
ctgggctgggcggccaagaccctgggcatgtacgtggccagcccggtcttcgacggcgcc
aacgagcaggacatccgggagatgctgctgaaggcccacctgccgcccaacggcaagacg
gtgctctacgacggcaagaccggcgagcccttcgacaacgaggtcaccgtcggctacaag
tacatgctgaaactccaccacctggtggacgacaagatccacgcccggtccacgggcccg
tactcgctggtcacccagcagcccctgggcggcaaggcgcagttcggcggccagcgcttc
ggcgagatggaggtgtgggcgctggaggcctacggcgccgcctacacgctgcaggagctg
ctcacggtcaagtccgacgacgtggtcggccgcgtgaagacctacgaggccatcgtgaag
ggcgagaacgtgccggagcccggcgtgcccgagtcgttcaaggtgctcatcaaggagctg
cagtccctggccctggacgtcaaggtgctcgacgagagcggcaacgagatcgagctgcgc
gagctggacgacgagatggacctgtccgaccgcgacctggagatcccgacgctgggcggc
gcggagctggcgaagcctgcgcccgacgcccaggccggcgaggaatcgggcgaggccggg
gaggagtccgagggcgagcccgaagaggaggacgtggaggagatcgacgttcccctcgat
ccggaggagctggagaaggtcgcgggcgccctgaagaaccccgtgcgcgcgggccgccgc
ggcgccggtggcgggctggccgacgacgaccaggagatggacgaggaggacctgttcgac
gagggcgacgaggatctggcggacgacgtcggtctctaccggggccgcagccgccgcctg
gcggacgacttcggcgacgaagaggaagagtag

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