KEGG T01128: Sthe

Sphaerobacter thermophilus: Sthe_3251

Entry

Sthe_3251         CDS       T01128

Name

(GenBank) protein of unknown function UPF0027

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

sti Sphaerobacter thermophilus

Brite

KEGG Orthology (KO) [BR:sti00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sti03016]
    Sthe_3251
Enzymes [BR:sti01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Sthe_3251
Transfer RNA biogenesis [BR:sti03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Sthe_3251
Prokaryotic type
   tRNA splicing ligases
    Sthe_3251

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

ACZ40651

UniProt:

D1CA08

Position

2:complement(927131..928594)

AA seq 487 aa
MAQQRTSVPITRVERYVYEIPAHGEMRVPARIYADEELIEELTAPAAQEWSALQQLVNVA
SLPGIQKAALAMADVHPGYGFPIGGVGAFDPKEGVISVAGVGFDINCGVRLLATELTRAD
LEGKEDRVADALFHGVPAGLGSTGELKLTEKEIDRVLREGAHYAVNLGYGTPADLTYVEE
QGRMSGADPDAVSRTAKQRQLRQVGTLGSGNHYVEVQVVDEIYDEEAARAFGLAVGQVTI
MLHTGSRALGHQIGTDYLPFLERAARKYNIPIRDRELVCAPVESPEGRQYYAAVMAGANT
AFANRQVLTHLIREALNKALGVAPESIRTVYEIAHNTVKFEEHEVNGRRKRLLVHRKGAT
RAFGPGRPEIPERYRSVGQPVLVGGTMGTASYVLRGTEKGMRDTFGSALHGAGRAKSRTK
AKKEYPADRVIRQLKERGITVRAHGRSSISEEAPGAYKDVEQVVDIMAGAGVIAKVARLR
PVVTIKG

NT seq 1464 nt +upstreamnt +downstreamnt
atggcacagcagcggacaagcgtaccgatcacgcgcgtcgagcgctacgtgtacgagatc
ccggctcacggtgagatgcgcgtcccggcgcggatctacgccgacgaggagttgatcgag
gagctgacggcccccgcggcgcaggagtggagcgcgctgcagcagctcgtgaacgtcgcc
agcctacccggcatccagaaggcggcgctggcgatggccgacgttcaccccggctacggc
ttcccgatcggcggcgtcggcgcgttcgaccccaaggagggcgtcatcagcgtcgccgga
gtcgggttcgacatcaactgcggcgtgcgcctgctcgccaccgagctgacccgtgccgac
ctggagggcaaggaggaccgggtggccgatgccctcttccacggcgtcccggccgggctc
ggcagcaccggggagttgaagctcaccgagaaggagatcgaccgggtgctgcgcgagggc
gcgcactatgccgttaacctcggctacggcaccccggccgatctgacctacgtcgaggag
caggggcggatgtccggtgccgacccggacgccgtgagccgcacggccaagcagcggcaa
ctgcggcaggtcggcacgctcggttcgggcaaccactacgtcgaggtgcaggtcgttgat
gagatctacgacgaggaagccgcccgcgccttcggcctcgcggtggggcaggtcaccatc
atgctccacaccggcagccgcgcgctcggccaccagatcggcaccgactacctgccgttc
ctggagcgggctgcccggaagtacaacatcccgatccgcgatcgcgagctggtttgcgcg
cccgtcgagagcccggagggacggcagtactacgcagcggtcatggccggcgccaacacg
gccttcgccaatcgccaggtgctgacccacctgatccgggaggcgctcaacaaggcgctc
ggcgtcgcgcccgagtcgatccgcaccgtctacgagatcgcgcacaacaccgtgaagttc
gaggaacacgaggtgaacggccggcggaagcgcctgctcgtgcaccgcaagggcgccaca
cgtgcgttcgggccgggtcgccccgagatcccggagcgctaccgctcggtcggccagccg
gtgctggtcgggggcacgatgggcaccgccagctacgtcctacgcggcaccgagaagggg
atgcgcgacaccttcggcagcgcgctgcacggcgccgggcgggcgaagtcgcggaccaag
gcgaagaaggaatacccggcggaccgcgtgatccgtcagttgaaggagcgcggcatcacc
gtgcgcgcccacggccgctcatcgatcagcgaggaggcgcccggcgcctacaaggacgtc
gagcaggtggtggacatcatggccggggccggggtcatcgcgaaggtcgcccggctgcgg
ccggtcgtgaccatcaagggctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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