KEGG   Sulfurisphaera tokodaii: STK_22800
Entry
STK_22800         CDS       T00062                                 
Symbol
xpd
Name
(GenBank) DNA repair helicase XPD
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
sto  Sulfurisphaera tokodaii
Pathway
sto03022  Basal transcription factors
sto03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sto00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    STK_22800 (xpd)
  09124 Replication and repair
   03420 Nucleotide excision repair
    STK_22800 (xpd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sto03021]
    STK_22800 (xpd)
   03400 DNA repair and recombination proteins [BR:sto03400]
    STK_22800 (xpd)
Enzymes [BR:sto01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     STK_22800 (xpd)
Transcription machinery [BR:sto03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     STK_22800 (xpd)
DNA repair and recombination proteins [BR:sto03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     STK_22800 (xpd)
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 ResIII DEAD PhoH MCM_lid
Other DBs
NCBI-ProteinID: BAB67389
UniProt: Q96Y88
Position
2287204..2288850
AA seq 548 aa
MELRDWQKQLKDKVINAVKEGFLVALNSPTGSGKTLFSLLVGLNTKGKVIFVVRTHNEYF
PVYRDVKKIDPSLKFSFVIGKPSACPFAAKDVDTEDINCKYCEIKNAIEVKIDKSPFEKL
KELKENGIKEGFCPYYSLLESAKEADIITITYPYFFIEKYLSLLDINLEEYFIVIDEAHN
IDKVSEIEERTLSEFILSMAIKQSKSEEVRRILDRLIKELKTLTYQDEKYIKLDKVPELS
DEELSLLVDEYEELRKEAIKSKSVSRIYLGSVIRFYATYSTGNFIPFSFSNKIVLKTLEL
NQYYNLLNDENLSILLMSGTLPPKEYLEKVIGISRKILYINVEKEVKKKVTGSYQCKIAI
DVTSKYDLRSEAMWKKYSSYLLKIYYQARNHVLAVFPSYQIMEKVMSYVNVNKILENEGT
RIDDVIKIVKESRQKYIIAGVGRGKITEGVEITDNDRSLISDVVLVGVPYPPEDDYMKLL
SKKISEKLGGKEKEYLIMIPALITVKQAIGRSIRNINDTALVWLLDKRYDSLWWKKNLNC
FNSTKIRL
NT seq 1647 nt   +upstreamnt  +downstreamnt
gtggagttaagagattggcaaaagcaattaaaagataaagtaataaatgctgtcaaagaa
ggttttttagtcgcattaaactcccctacggggagtggtaaaacacttttttctctttta
gttggtcttaatactaagggtaaagtgatctttgtagttagaacgcataatgaatatttt
ccagtatatagggatgtaaagaaaattgatccttctctaaaattttcgtttgttataggt
aagcctagtgcttgtccctttgcagctaaggatgtagatactgaagatattaattgtaaa
tactgtgagataaaaaatgctatagaagttaaaatagataaatccccttttgagaaactt
aaagaattaaaagaaaatggtataaaagaagggttctgtccctattattctctgttagaa
tcagcaaaggaagctgatatcattacaataacgtacccttatttttttattgaaaaatat
cttagtttacttgacatcaacttagaagaatatttcatagtaatagatgaggctcataat
atagataaagtaagtgaaattgaggaaagaacactaagtgaatttattctctcaatggca
ataaaacagagcaagagcgaagaagtaagaaggatattagatagactcataaaagagtta
aaaactctaacttatcaagatgaaaaatatataaaattagataaagtgcctgagttgtca
gatgaggaactctcactgttagttgatgagtacgaagaattaagaaaagaggcaataaaa
tcgaaaagcgtgtctagaatctatctgggctctgtgatccgtttttacgctacgtattct
actggaaattttatacctttttctttttctaataaaattgtcctaaaaacattagagcta
aaccaatattacaacttactaaatgatgaaaatctttctattttattaatgtccggtact
ttaccaccaaaggaatacttagagaaagtaataggaatttctagaaaaattttatatata
aacgtagagaaagaagtaaagaaaaaagtaacaggcagttatcaatgtaaaatagcgata
gatgtgacttctaaatacgatctaagaagtgaagcaatgtggaaaaaatattcctcgtat
ttgttaaaaatttactatcaagctagaaatcatgtgttagcagtatttccatcttatcag
ataatggaaaaagtaatgagttatgttaatgtaaataaaatcttagaaaatgaaggaaca
agaattgatgatgttataaaaatagttaaagagagcagacaaaaatatataatagctggc
gtaggaagaggaaaaataactgagggtgtagagataacggataatgatagaagtttaatt
tcagatgtagtcttagttggtgtcccttatcctccagaagatgattatatgaaattactt
tctaagaaaatttcagaaaaactgggaggaaaagagaaagaatatctaataatgataccg
gctttaattactgtaaaacaagctataggtaggtctataagaaatataaatgatactgca
ttagtttggttactagataaacgatatgattccttatggtggaagaaaaacctaaattgt
tttaattcaacaaaaataaggctatga

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