KEGG   Salinispora tropica: Strop_2106
Entry
Strop_2106        CDS       T00504                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
stp  Salinispora tropica
Pathway
stp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:stp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Strop_2106
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stp03019]
    Strop_2106
   03009 Ribosome biogenesis [BR:stp03009]
    Strop_2106
Enzymes [BR:stp01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     Strop_2106
Messenger RNA biogenesis [BR:stp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Strop_2106
Ribosome biogenesis [BR:stp03009]
 Prokaryotic type
  rRNA helicases
   Strop_2106
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII WSD
Other DBs
NCBI-ProteinID: ABP54557
UniProt: A4X6Q7
Position
complement(2380040..2381779)
AA seq 579 aa
MSSAPVRPDPTAEPSTDDEATAFVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRD
LLGQAATGTGKTAAFALPMLQRMPANRSTTNPVALVLVPTRELAVQVSEAFHRYGKELGA
RVLPIYGGQPIGRQLRALDAGVDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDM
GFAEDIEAILEHAPEQRQTVLFSATMPARIDGMARAHLTDPIRILIAREKPVAGEAPRVR
QSAYLVSRAHKPAALGRVLDVESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQ
EQRDRVMGRLRAGTADLLVATDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGR
EGVAITLAEPRAHRMLKTIERVTGQRITIDKIPTVADLRNRRLELTQAALRESLLEDDLE
PFRVIVESLSDEFDLMEVALAAVRLAHEATLPGALEEEEEIPEIAVRPPRAGRPGHEGRG
ERRPGRPRSAGTTQVFVGLGRRAGVRPQDLVGAITGETGMNGRDIGSIEIADRFSLVEVP
AGMADEVISGLRGSTIKGRRTTVRRDRDTDGGDRRRQHR
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgagttccgcacccgtaaggccagatccaactgccgaaccgtccactgacgacgaggcg
accgccttcgtcgacctgggcctgcgcgacgaactcctcgccgcgctcgccgcgctcggc
tacgaggagccgacgccgatccagcgggaggcgatccctcccctgctcgccggacgggat
ctactcggccaggccgccacgggtaccggcaagacggccgcgttcgccctgccgatgctg
caacggatgcctgccaaccggtcgaccaccaatccggtggcactggtgctggtacccacc
cgagagctggcggtacaggtctcggaggcgttccatcggtacggcaaggaacttggcgcc
cgggtactgccgatctacggtggccagccgatcggccggcaactgcgcgctctggacgcc
ggggtggacgtcgtggtggcaacccccggtcgagcgctcgaccacatcgcccgcggtacg
ctgcgcctgggtgacgtcggcaccgtcgtgctggacgaggcggacgaaatgctggacatg
ggcttcgccgaggacatcgaggcgatcctggaacacgcgccggagcagcggcagaccgtg
ctgttctcggcgaccatgccggcccgcatcgacggcatggcccgggctcacctgaccgac
ccgatccgcatcctcatcgcgcgagagaagccggtagccggcgaggctccccgggtacgg
cagagcgcgtacctggtgtcccgggcgcacaagcccgccgcgctgggccgggtgctggac
gtcgagtcccccacggcggcgatcgtcttctgccgcagccgggaggaggttgaccggctc
accgagacgatgaacggtcgcggctaccgggccgaggcgctgcacggcgggatgagtcag
gagcagcgggaccgggtgatgggtcggctgcgcgccggtaccgccgacctgttggtagcc
accgacgtggcagcgcggggcctggatgtcgagcagctcagccacgtcgtcaactacgac
gtcccctcggcgcccgagtcgtacgtgcaccggatcggccgggtggggcgagccggccgg
gagggggtggcgatcactctcgccgagccacgggcgcaccggatgctcaagaccatcgaa
cgggtcaccggccaacggatcaccatcgacaagatccccaccgtggcggacctgcgcaat
cgtcgcctggaactcacccaggccgcgctgcgggagagcctgctggaggacgacctggag
ccgttccgggtcatcgtcgagtcactgagcgacgagttcgacctgatggaggtggccctc
gccgcggtacgcctggcccacgaggccaccctgcccggcgccttggaggaggaagaggag
atcccggagatcgcggttcgcccaccccgggccggccgcccgggacacgagggccgggga
gagcgccggccggggcggccccggagcgccggcaccacccaggtcttcgtcgggctgggt
cggcgtgccggggtccgaccgcaggatctggtcggcgcgatcaccggcgagaccggcatg
aacggccgggatatcggctcgatcgagatcgcggaccgcttctcgctggtggaggtgccg
gcggggatggccgacgaggtgatctccggcctgcgcggcagcaccatcaagggacgccgg
acgaccgttcgccgcgatcgtgacaccgacgggggtgaccgccgccggcagcaccgttga

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