KEGG   Streptomyces sp. 4F: ASR50_04130
Entry
ASR50_04130       CDS       T04265                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
strf  Streptomyces sp. 4F
Pathway
strf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:strf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ASR50_04130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:strf03400]
    ASR50_04130
Enzymes [BR:strf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ASR50_04130
DNA repair and recombination proteins [BR:strf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ASR50_04130
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: ALV54271
Position
996283..997263
AA seq 326 aa
MTLPLIPPMLATPGRLPPPSADARWAYETKQDGQRAVVYLPGDGTVVLRARSGQEITGAY
PELRPLAAALGSRPAVLDGEVLALDAEGRASFQLLQSRMGLAHSPARAARRAETVPAHLI
LFDVMHLDGRPLLREPYVRRREELLDLGLDGPSWSTPAAIVGHGAQALRATVEHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMRSEDVLVGGWLPGKGRLTGLPGAVLVGQRAGGRLRYV
GGVGTGWSEAERTELAALLKAAATDVCPFDPAPSVPGARWVVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEDAAADLPDDLG
NT seq 981 nt   +upstreamnt  +downstreamnt
gtgaccctcccgctgatcccgcccatgctcgccacccccggccggctgccgcctccctcg
gcggacgcgcgctgggcgtacgagaccaagcaggacggccagcgggcggtggtctacctc
ccgggcgacgggaccgtcgtcctgcgcgcccggtccggccaggagatcaccggcgcgtat
cccgagctgcgcccgctggcggccgcgctcgggtcccgtcccgccgtgctggacggggag
gtcctcgccctggacgcggagggcagggccagcttccagctgctccagtcgcggatgggc
ctggcccactcccccgcccgcgcggcccgccgggcggagacggtgccggcgcacctgatc
ctgttcgacgtgatgcacctggacggccgcccgctgctccgcgagccgtacgtccgccgc
cgcgaggagctgctggacctcgggctcgacgggccgtcctggtccaccccggccgcgatc
gtgggccacggcgctcaggcgctgcgggccaccgtcgagcacggcctggaggggctggtg
tgcaagcggctggactcggtgtacgagccgggggtccgctcccgcgcctggatcaagatc
cgcaacatgcgcagcgaggacgtgctggtcggcggctggctgccgggaaagggccggctg
accggactgccgggcgccgtcctggtcgggcagcgggcggggggccggctgcgctacgtg
ggcggcgtgggcaccggctggagcgaggccgaacgcaccgagctggccgcgctgctgaag
gccgcggcgaccgacgtctgccccttcgacccggcgccctccgtcccgggcgcccggtgg
gtggtgccccggctggtcggcgaggtgcgctacagcacccgtacccgggagggcatgctg
cgccagccgtcctggctgcggctcaggcccgacctggcgcccgaggacgcggcggccgac
ctccccgacgacctgggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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