KEGG   Peterkaempfera bronchialis: C7M71_014060
Entry
C7M71_014060      CDS       T05561                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
stri  Peterkaempfera bronchialis
Pathway
stri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:stri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C7M71_014060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:stri03021]
    C7M71_014060
   03019 Messenger RNA biogenesis [BR:stri03019]
    C7M71_014060
Transcription machinery [BR:stri03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     C7M71_014060
Messenger RNA biogenesis [BR:stri03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     C7M71_014060
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind AAA_25 NACHT AAA_22 AAA
Other DBs
NCBI-ProteinID: AXI81403
UniProt: A0A345T5Z8
Position
3168509..3169915
AA seq 468 aa
MTGSGCSLSLPPRPVAPCGPSRALPCDAVRAPAATAARPFTRPPGDRPPGHPFAKGLRVT
DILERPVSPAPPASPAFPACPVSPALRSEDPPVRVSGVLDLAGGRAHLRTAGLLPSPEDP
LVPQDLVRRLDLRRGDLVQATTARPPQGTGRRSGPAARTVARVELVNGHRADALPHRPHF
ADLTPLHPVRRLRLETAPHRLATRVIDLLAPVGKGQRGLIVAPPKTGKTMILQAVADAVA
RNHPECHLMVVLLDERPEEVTEMRRSVRGEVLSSTFDRPARDHTALADLAVERAKRLAEL
GGDVVVLLDSLTRLCRAHNTTAPGNGRTLSGGVDASALLGPKRFFGAARALEEGGSLTIL
ATALVETGSRADDYFFEELKSTGNMELRLDRALADRRIFPAVDPGSSGTRREELLASPAE
LAATGRLRRLLGAQTAQQGMETVLARMRESAGNADFLQRVLSTTPARP
NT seq 1407 nt   +upstreamnt  +downstreamnt
atgaccggcagcgggtgcagcctctctctcccgccgagaccggtcgctccctgcggcccg
tcccgtgccttgccgtgcgatgccgtgcgcgccccggccgccaccgccgcccggccgttc
acccgcccgccgggcgaccgcccgccgggccatccgttcgcgaaaggacttcgcgtgacc
gacatcctcgaacgccccgtctcccccgctccccctgcctcccctgccttccccgcttgc
cccgtctccccggccctccggtcggaggacccgcccgtgcgggtctccggcgtcctggac
ctggccggtggccgggcccatctgcggaccgccggccttctgccctccccggaggacccg
ctggtgccccaggacctggtgcgccgcctggacctgcgccggggcgacctggtccaggcc
accaccgcccggccgccgcagggcaccggccgccggagcggccccgccgcccgtacggtg
gcccgggtcgagctggtcaacggccaccgcgcggacgcgctgccgcaccgcccgcacttc
gccgacctcaccccgctgcaccccgtccggcggctccggctggagaccgccccccaccgg
ctcgccacccgggtcatcgacctgctggcgccggtcggcaagggccagcgcgggctgatc
gtcgccccgccgaagaccggcaagacgatgatcctccaggccgtcgccgacgccgtcgcc
cgcaaccaccccgagtgccatctgatggtggtgctgctggacgagcgtcccgaggaggtg
accgagatgcggcgctcggtacggggcgaggtgctctcctccaccttcgaccggccggcc
cgggaccacaccgccctcgccgacctggcggtggagcgcgccaagcggctggccgaactc
ggcggggacgtggtcgtactgctcgactccctgacccggctctgccgggcccacaacacc
accgccccgggcaacggccgcaccctctcgggcggcgtcgacgcctcggcgctgctgggg
cccaagcggttcttcggcgccgcccgcgctctggaggagggcggttcgctgaccatcctg
gccaccgcgctggtggagaccggctcccgggccgacgactacttcttcgaggagctcaag
agcaccggcaacatggagctccggctggaccgcgcgctcgccgaccggcggatcttcccc
gccgtcgaccccggctcctccggcacccgcagggaggaactgctcgcctccccggccgag
ctggccgccaccggcaggctgcggcggctgctgggggcccagaccgcgcagcagggcatg
gagacggtcctggccaggatgcgggagtcggccggcaatgcggacttcctgcaaagggtc
ctgagcaccaccccggcccgcccctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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