KEGG   Streptomonospora litoralis: EKD16_10660
Entry
EKD16_10660       CDS       T05863                                 
Symbol
ykoU1
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
strr  Streptomonospora litoralis
Pathway
strr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:strr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EKD16_10660 (ykoU1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:strr03400]
    EKD16_10660 (ykoU1)
Enzymes [BR:strr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EKD16_10660 (ykoU1)
DNA repair and recombination proteins [BR:strr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EKD16_10660 (ykoU1)
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: QBI53918
UniProt: A0A4P6Q066
Position
complement(2400744..2401694)
AA seq 316 aa
MSASPTSLKAGRHTVDLGKPDKELFGQGGVTKRELAEHYRAVAPLMLPHVRNRPLALHRF
PDGVFAEGGTEGFFQKQLPAHAPDFIGGVEVPREQGGSVTMAVCDDTASLLWLADQAVIT
PHPWLSRADSLEHPDRIIVDLDPAGDDFGLVREAAHDIRAALDEVDLVGFVMTTGSRGLH
VTSPIRPDEHFDEVRSFARRLADVVAARRPDTYTTEFRKDKRRGRLFLDVMRNAYAQHAV
APYAVRALAEAPVAVPLSWDELDGVGSARAWTVRTLGDRLQRLDEADGDPWKGMARRARS
PRKAAERLAKLERRES
NT seq 951 nt   +upstreamnt  +downstreamnt
atgagcgcctcgccgacgtcgttgaaggccgggcgccacacggtggacctgggcaagccc
gacaaggagctgttcggacagggtggagtcaccaagcgggaactggccgagcactaccgc
gccgtggcgcccctgatgctgccgcacgtgcgcaaccggccgctggccctgcaccgcttc
cccgacggcgtcttcgccgagggcggcacggaggggttcttccagaagcagctgcccgcc
cacgcccccgacttcatcggcggggtcgaggtcccgcgcgagcagggcggcagcgtcacc
atggcggtctgcgacgacaccgcgagcctgctgtggctggccgaccaggccgtcatcacc
ccgcacccctggctcagccgcgccgacagcttggagcaccccgaccgcatcatcgtcgac
ctcgatcccgccggcgacgacttcgggctggtccgcgaggccgcgcacgacatccgcgcc
gcgctggacgaggtggacctggtcggcttcgtgatgaccacgggatcgcgcggactgcac
gtgacgtcgccgatccgccccgacgagcacttcgacgaggtgcgttcgttcgcccggcgc
ctcgccgacgtcgtcgccgcgcgcaggcccgacacctatacgaccgagttccgcaaggac
aagcgccgcggacggctgttcctggacgtcatgcgcaacgcctacgcccagcacgccgtg
gcgccctacgcggtgcgcgcgctggccgaggcgccggtggccgtcccgctgtcctgggac
gagctggacggggtcggctcggctcgggcgtggacggtgcgcacgctgggcgaccggctg
cagcggctggacgaggcggacggcgacccgtggaagggcatggcccgccgggcccgctcg
ccgcgcaaggcggcggagcgcctggcgaagctggagcggcgggagtcctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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