KEGG T02116: Y1U

Streptococcus thermophilus MN-ZLW-002: Y1U_C1803

Entry

Y1U_C1803         CDS       T02116

Name

(GenBank) DNA-directed RNA polymerase subunit alpha

K03040

DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]

Organism

stw Streptococcus thermophilus MN-ZLW-002

Pathway

stw03020

RNA polymerase

Brite

KEGG Orthology (KO) [BR:stw00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Y1U_C1803
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:stw03021]
    Y1U_C1803
   03400 DNA repair and recombination proteins [BR:stw03400]
    Y1U_C1803
Enzymes [BR:stw01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Y1U_C1803
Transcription machinery [BR:stw03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Y1U_C1803
DNA repair and recombination proteins [BR:stw03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Y1U_C1803

SSDB

Motif

Pfam:

RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L Mg_chelatase_C

Other DBs

NCBI-ProteinID:

AFJ84252

Position

complement(1750478..1751416)

AA seq 312 aa
MIEFEKPIITKIDENKDYGKFVIEPLERGYGTTLGNSLRRVLLSSLPGAAVTSIKIDGVL
HEFDTVPGVREDVMQIILNIKGLAVKSYVEDEKTIELDVQGPAEVTAGDILTDSDIEIVN
PDHYLFTIAEGASFQATMTVSTNRGYVPAEENKKDDAPVGTLAVDSIYTPVKKVNYQVEP
ARVGSNDGFDKLTIEIVTNGTIIPEDALGLSARILIEHLNLFTDLTDVAKATDVMKETEK
VNDEKLLDRTIEELDLSVRSYNCLKRAGINTVHDLTEKTEPEMMKVRNLGRKSLEEVKVK
LADLGLGLKNDK

NT seq 939 nt +upstreamnt +downstreamnt
atgattgagtttgaaaaaccaataataacaaaaattgatgaaaataaagattacggcaaa
tttgtcatcgaaccactagaacgtggttatggtacaactttgggtaactctcttcgtcgt
gtactcttgtcatcacttccaggtgctgccgtaacatcaattaaaattgatggagtgctc
cacgagtttgataccgtaccaggcgtccgtgaagacgtgatgcaaattatccttaatatt
aagggacttgctgtaaaatcttacgtcgaagacgaaaaaacaattgaacttgatgttcaa
ggtccagctgaggttactgctggagatatcttgactgatagtgacattgaaattgttaac
cctgatcattatctttttactatcgctgagggtgcttcattccaagcaacaatgacagta
tctacaaaccgtggttatgttccagcagaagaaaataaaaaagatgatgcaccagtggga
actttggctgtagattcaatctacacaccagtgaaaaaagtcaattatcaagttgaacct
gctcgtgtaggtagcaatgatggttttgataaattgacaatcgaaatcgtgacaaacgga
acaatcatcccagaagatgccctcggtctctcggctcgaattttgattgaacacttgaat
ttgtttacggatcttactgatgtggctaaagctacagatgtgatgaaggaaactgaaaaa
gtgaacgatgaaaaattgcttgatcgtaccatcgaagaacttgatttgtctgtacgctca
tataactgtttgaaacgtgccggtatcaataccgttcatgatttaacagagaagactgag
cctgaaatgatgaaagtccgtaacctaggtcgtaaatcacttgaagaagtcaaagttaaa
ttggctgatcttggacttggacttaaaaatgataaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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