KEGG   Staphylococcus aureus subsp. aureus ST398 (MRSA): SAPIG1998
Entry
SAPIG1998         CDS       T02071                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sug  Staphylococcus aureus subsp. aureus ST398 (MRSA)
Pathway
sug03030  DNA replication
sug03410  Base excision repair
sug03420  Nucleotide excision repair
sug03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sug00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SAPIG1998 (ligA)
   03410 Base excision repair
    SAPIG1998 (ligA)
   03420 Nucleotide excision repair
    SAPIG1998 (ligA)
   03430 Mismatch repair
    SAPIG1998 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sug03032]
    SAPIG1998 (ligA)
   03400 DNA repair and recombination proteins [BR:sug03400]
    SAPIG1998 (ligA)
Enzymes [BR:sug01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SAPIG1998 (ligA)
DNA replication proteins [BR:sug03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SAPIG1998 (ligA)
DNA repair and recombination proteins [BR:sug03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SAPIG1998 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SAPIG1998 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     SAPIG1998 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SAPIG1998 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT RNA_pol_A_CTD zf-NADH-PPase HHH zf-IS66
Other DBs
NCBI-ProteinID: CAQ50386
Position
complement(2073760..2075763)
AA seq 667 aa
MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV
RVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSL
KYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLNVEVRGEAYMPRRSFLRLNE
EKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEALDELD
KLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSP
RWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHDR
DIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRIEGEVALRCI
NPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSELIKDVADIFYLTEEDLLPLDRM
GQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAELVE
IHDIGDKVAQSVVTYLENEDIRALIQKLKYKHVNMIYKGIKTSDIEGHPEFSGKTIVLTG
KLHQMTRNEASKWLTSQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVD
KQNELNS
NT seq 2004 nt   +upstreamnt  +downstreamnt
atggctgatttatcgtctcgtgtgaacgagttacatgatttattaaatcaatacagttat
gaatactatgtagaggataatccatctgtaccagacagtgaatatgacaaattacttcat
gaactgattaaaatagaagaggagcatcctgagtataagactgtagattctccaacagtt
agagttggcggtgaagcccaagcctctttcaataaagtcaaccatgacacgccaatgtta
agtttagggaatgcatttaatgaggatgatttgagaaaattcgaccaacgcatacgtgaa
caaattggcaacgttgaatatatgtgcgaattaaaaattgatggcttagcagtatcattg
aaatatgttgatggatacttcgttcaaggtttaacacgtggtgatggaacaacaggtgaa
gatattaccgaaaatttaaaaacaattcatgcgatacctttgaaaatgaaagaaccatta
aatgtagaagttcgtggtgaagcatatatgccgagacgttcatttttacgattaaatgaa
gaaaaagaaaaaaatgatgagcagttatttgcaaatccaagaaacgcagctgcggggtca
ttaagacagttagattctaaattaacggcaaaacgaaagctaagcgtatttatatatagt
gtcaatgatttcaccgatttcaatgcgcgttcgcaaagtgaagcattagatgagttagat
aaattaggttttacaacgaataaaaatagagcgcgcgtcagcgatatcgatggcgtttta
gaatatattgaaaaatggacaagccaaagggaatcattgccatacgatatcgatggtatt
gtgataaaggttaatgatttagatcagcaggacgaaatgggattcacacaaaaatcacca
agatgggccattgcttataaattcccagctgaggaagtggtaactaaattattagatatt
gaattaagtattggacgtacaggtgtagtcacacctactgctattttagaaccagtaaaa
gtagctggtacaactgtatcaagagcatccttgcacaatgaagatttaattcatgacaga
gatattcgaattggtgatagtgttgtagtgaaaaaagcaggtgacatcatacctgaagtt
gtacgtagtattccagaacgtagacctgaggatgctgtcacatatcatatgccaacccat
tgtccaagttgtggacatgaattagtacgtattgaaggcgaagtagcacttcgttgcatt
aatccaaaatgccaagcacaacttgttgaaggattgattcactttgtatcaagacaagcc
atgaatattgatggtttaggcactaaaattattcaacagctttatcaaagcgaattaatt
aaagatgttgctgatattttctatttaacagaagaagatttattacctttagacagaatg
gggcagaaaaaagttgataatttattagctgccattcaacaagcaaaggacaactcttta
gaaaatttattattcggtctaggtattaggcatttaggtgttaaagcgagccaagtgtta
gcagaaaaatatgaaacgatagatcgattactaacagtaactgaagcggaattagtagaa
attcatgatataggtgataaagtagcacaatctgtagttacttatttagaaaatgaagat
attcgtgctttaattcaaaaattaaaatataaacatgttaatatgatttataaaggtatc
aaaacatcagatattgaaggacatcctgaatttagtggtaaaacgatagtactgactggt
aagctacatcaaatgacacgcaatgaagcatctaaatggcttacatcacaaggtgctaaa
gttacaagtagcgttactaaaaatacagatgtcgttattgctggtgaagatgcaggttca
aaattaacaaaagcacaaagtttaggtattgaaatttggacagagcaacaatttgtagat
aagcaaaatgaattaaatagttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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