KEGG   Sulfuriferula sp. AH1: CAP31_12005
Entry
CAP31_12005       CDS       T04857                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
sulf  Sulfuriferula sp. AH1
Pathway
sulf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sulf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CAP31_12005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sulf03400]
    CAP31_12005
DNA repair and recombination proteins [BR:sulf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CAP31_12005
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CAP31_12005
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran AAA_16 SMC_N AAA_29 nSTAND1 AAA_23 RsgA_GTPase nSTAND3 BCA_ABC_TP_C DnaJ_CXXCXGXG AAA_21 APS_kinase NACHT cobW T2SSE Viral_helicase1
Other DBs
NCBI-ProteinID: ARU32334
UniProt: A0A1Y0GAF4
Position
2384441..2387248
AA seq 935 aa
MDIIRIRGARTHNLKDINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGTPHC
PDHHIKLTAQTVSQMVDHVLALPEDTRLMILAPIIVGRKGEHTDLFGELRAQGFVRVRID
GNVHEMDVLPKLDKNKKHTIEVVVDRLKVRADIKQRLAESFETALRHADGRALAVEMDSG
HETLFSARFSCPVCDYSLAELEPRLFSFNNPMGACPKCDGLGVIQYFDPKRVVAFPHLSL
AAGAIKGWDRRNPFYFQLLQSLALHYGFDLDTPFENLPETVRGVILNGSGKEQIAFHYPG
ERRPRMHAFEGILTTLARRYKETDSSTVREELAKHLNSQPCPSCEGTRLRREARHVFVAG
KTIYALSALPLKQSLTFFESLELSGNKQAIADRIVKEIAARLQFLNNVGLEYLSLDRSAE
TLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLRRLRDLGNTVIVVE
HDEDAIRTADYVVDMGPGAGVHGGHVVAMGTPADILANADSLTGQYLSGRRKIAIPAKRR
QPDPTRELVLTGASGNNLKNVTLTLPAGLLVCVTGVSGSGKSTLINDTLYAAMARHLYGS
AAEPAPYTSITGLALFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPAARERGY
SPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGKRYNRETLEIQYKGKTID
EVLAMTVEDAHAFFNAVPVVARKLQTLLDVGLGYIQLGQAATTLSGGEAQRVKLSLELSK
RDTGRTLYILDEPTTGLHFHDIDMLLKVIHRLADQGNTIVVIEHNLDVIKTADWVIDIGP
EGGDGGGGIVACGTPEQVAANPASHTATYLKPLLA
NT seq 2808 nt   +upstreamnt  +downstreamnt
atggacattatccgcattcgcggcgcacgcacgcacaatctcaaggacatcaatctcgat
ttaccgcgcaaccagcttgtcgtgattaccggcttgtccggctcgggtaaatcctcgctg
gcattcgatacgctttacgccgaaggccagcggcgctatgtcgaatcgctatcggcgtat
gcgcggcagtttttgcagctgatggaaaaacccgatgtcgatctgatcgaagggctatcg
cccgccatctcgatcgagcagaaagccaccagccataatccgcgttctaccgttggcacc
gtcaccgagatacacgactatttgcgcctgctgtttgcgcgggtaggcacgccgcactgt
cccgatcatcacatcaagctgacggcacaaaccgtatcgcagatggtcgatcatgtgttg
gcattaccggaagataccaggttgatgatactcgcgcctatcatcgtcgggcgcaagggc
gaacacacggacttattcggggagctgagagcacagggctttgtccgcgtacgcatcgat
ggcaacgtgcatgaaatggatgtattgccgaagctggacaagaacaagaaacataccatc
gaggtggtggtcgaccggctcaaggtgcgtgccgatatcaaacagcgtctcgccgaatcg
tttgaaaccgcattacgccatgccgacgggcgcgcattggcggtagagatggatagcggt
cacgagacgctgttctcggcccgcttctcctgcccggtgtgcgattactcacttgccgaa
ctcgagccgcgtttattttcgttcaacaatccgatgggtgcctgtccaaaatgcgacggc
ctgggggttatccaatatttcgacccgaaacgggtggtggcttttccgcatttgtcgctg
gcagctggcgccatcaagggctgggatcggcgcaacccgttttatttccagctcctgcaa
agcctcgccctgcattacggtttcgatctggacacgccgttcgaaaacctgccggagacc
gtgcgcggagtgatactcaacggcagcggcaaggaacagatcgcgtttcattatcccggt
gaacgccgcccacgcatgcacgcttttgaaggcatcctgacgacgctcgcgcggcgctac
aaggaaaccgattccagcaccgtacgcgaagagctggcaaaacacctcaacagccagccc
tgccccagctgtgaaggaacccgattacgccgcgaagcgcggcatgtgtttgtcgccgga
aagaccatctacgcattatctgcattgccattgaagcaatcgctcactttttttgaatca
ctggaactgtctggcaacaagcaggcgattgcggatcgcatcgtcaaggaaatcgcagcg
cgcctgcaattcctcaacaatgtcggcctggaatatctgtcattggaccgctctgcggaa
accttatcgggcggcgaagcgcaacgcatccgtctggcctcgcaaatcggttccggcctg
accggcgtgatgtacgtgctcgacgaaccctcgatcggcctgcatcaacgcgataacgac
aggctgctggcaaccttgcgccgactgcgcgacctcggtaatacggtaatcgttgtcgag
catgacgaggatgcaatccgcactgccgattatgtcgtggatatggggcctggtgcggga
gtgcatggcggccatgtcgtcgccatgggcacgccagccgacatcctcgcgaatgccgat
tcgctcactggtcaatatttgtccgggcggcgcaaaatagctatcccagccaaacgtcgc
cagcctgacccaacgcgtgagctagtgctcactggcgcatccggcaacaatctcaaaaat
gttaccttgacgctgccggcggggctgctggtgtgtgtcaccggcgtatcgggctcggga
aaatcgacgttgatcaacgacacgctgtatgcagccatggcacggcatttatatggttct
gcagccgagcccgcaccttacacatccataacaggcctggccctgttcgacaaggtcatt
aatgtcgaccagagtccgatcggacgcaccccgcgttccaatccggcgacctacacaggg
ttatttaccccgatacgcgaattatttgccggcgtccccgccgcccgcgaacgcggctat
agcccaggacgtttctcgttcaatgtcaaaggcggccgttgcgaagcctgtcagggtgac
ggcgtcatcaaggtggaaatgcattttctgccggacatttacgtaccgtgtgatgtctgc
cacggcaagcgctataaccgggaaacgctggaaatccagtacaaaggcaaaaccatcgac
gaagtattggcgatgacggtagaagatgcccatgcattctttaatgcggtccctgtcgtc
gcgcgcaaactgcaaaccctgcttgacgtcggcctaggttacattcagctggggcaggcc
gctaccacgttatccggcggcgaagcccaacgggtgaaactgtcgttggaattatccaaa
cgcgataccggtcgcaccttgtacatccttgacgaacctaccaccggtttgcatttccat
gatatcgacatgctgctcaaggtcatccaccgtcttgccgatcagggcaataccatcgtt
gtcatcgaacacaatctggatgtcatcaagaccgcagactgggtgatcgatatcggtccc
gaaggtggcgacggcggcggtggaattgtcgcctgcggcacaccggaacaggtggctgcg
aatccggccagccataccgctacctatctgaagcctttacttgcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (37)   

Download RDF
DBGET integrated database retrieval system