KEGG   Sulfurospirillum diekertiae JPD-1: SJPD1_0441
Entry
SJPD1_0441        CDS       T05109                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sulj  Sulfurospirillum diekertiae JPD-1
Pathway
sulj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sulj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SJPD1_0441
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sulj03021]
    SJPD1_0441
   03400 DNA repair and recombination proteins [BR:sulj03400]
    SJPD1_0441
Enzymes [BR:sulj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SJPD1_0441
Transcription machinery [BR:sulj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SJPD1_0441
DNA repair and recombination proteins [BR:sulj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SJPD1_0441
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 DNA_pol_alpha_N DUF6675
Other DBs
NCBI-ProteinID: ATB68564
UniProt: A0A290HPK8
Position
410464..414990
AA seq 1508 aa
MKRLEPIEIHEESRPRDFKAFQLRLASPEKIRSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGIKCEKCGVEVTSTKVRRSRMGHIELVTPVAHIWYVNS
LPSRVGTLLGVKMKDLERVLYYEAYIVEQAGEAFYDAENKNKVAVYDVLNEEQYQSLQQR
FEDTGFVAKMGGEVIRDLLANIDLVEVLGQLKEDINQTSSEAKKKTIVKRLKVVEAFLNS
GNRPEWMMITMLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNARLKRLMELDAPEI
IIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPNLKMDQCGLPKQMALELFKPHLLARLEEKGYATTVKQAKKMIDMKTNEVWE
CLAEVVKGHPVMLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCSAFNADFDGDQMAVHV
PLSQEAIAECKILMLSSMNILLPASGKAVTVPTQDMVLGLYYLTLEKPHAKGSNKIFANV
DEVHIAIDAGFLDIHAKIKTRINDRVLFTTAGRLILKSILPDFVPEAHWNRVLKKKNIGA
LVDFVFKEGGIGITAGFLDNIKRLGFKYATESGISVSIDDIRVPEAKVKKIKEAKKKVRE
IQKQFSSGLLTEQERYNKIIDIWTDTNNEVASEMMKLTESHKGGFNSIYMMADSGARGSA
AQIRQLAGMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLIDVAQNVKVTMDDCGTHEGVEITEISESGELVESLYERATGRVLAEDVIDTITN
EVLFTEGTLIDEKSAQALKEASIKSVVIRTPITCKAKKGVCAKCYGTNLAEGTLVRPGEA
VGIISAQSIGEPGTQLTLRTFHIGGTASTESQDRQVIAQKEGFIRYYNVKTYITKEGKNI
VANRRNAAVLLVEPKIKAPFKGTIEIDTAHEETAITITSGSGENIRYTLRKSDFAKPNEL
AGVSGKIEGKFYIPYVSGDMVEVNESIVEVIKEGWNVPSRIPYASELKVKNGDPIIQKIH
ADAKGVVKYYKLHGDYLDRIHDIEKGHVVKEKGIFAVVADNDDREAIRHYIPRDSIIDIN
DNSIVEGKTLLAYPSTSEQITIAEWDPYSTPIIAEDAGTVTFEDIEPGISATEQFDDMTG
QSRLVINEYLPSGMKPTIIIANKNGEIVKYQLEPKTAIFVQNGVTVGLADLIGRTPKAIA
KSKDITGGLPRISELFEARRPKNATVIAEIDGTIRFGKPLRSKERIIIEAADGTSVEYLV
DRNTQIHVQPGEFVHAGERLTDGVISSHDILRIMGEKALHYYLISEIQQVYRGQGVAIND
KHIEVIVSQMLRQVRIVDSGDTKFIMGDLISRRRFREENEAVMKMGGEPAIAEPTLLGVT
RAAIGSDSVISAASFQETTKVLTEASIAGKMDMLEDLKENVILGRMIPVGTGLYQNKQFN
IELNPSRG
NT seq 4527 nt   +upstreamnt  +downstreamnt
atgaaacgactagaaccaattgagattcacgaagagagccgtcctagggactttaaagca
tttcaattaagacttgcaagtccagaaaagattcgctcatggagttatggagaggttaaa
aaaccagaaaccattaactatcgtacgctcaaaccagagcgcgatggacttttctgtgcg
aaaatctttggacccgtcagagattatgaatgtctgtgcggaaaatataaaaagatgcgt
tacaaaggcatcaaatgtgaaaaatgtggcgttgaagtaacgagcaccaaagtgagacgt
tcacgtatgggacacatcgagttagtaactcctgtggctcatatatggtatgttaactcg
cttccaagtcgtgtgggaacattgcttggtgttaagatgaaagatcttgagcgcgtactt
tactatgaagcttacattgttgagcaagcaggcgaagcgttttacgatgcagaaaacaaa
aataaagttgcagtttatgatgttcttaatgaagaacaatatcaatcattgcagcaacgt
tttgaagatactggttttgtggcaaaaatgggtggcgaagttattcgtgatttattagcg
aatattgaccttgtcgaagttcttggtcaacttaaggaagatattaaccaaaccagttcc
gaagcaaagaaaaaaactattgtaaaacgtctcaaagtcgttgaagcattccttaacagc
ggtaaccgtcctgaatggatgatgattacaatgttgccagtccttccgccagatcttaga
ccacttgtggcactggatggtggaaagtttgcagtaagtgacgtcaatgacctgtatcgt
cgtgttatcaacagaaatgctcgtttgaaacgtttaatggaactcgatgcaccagaaatt
attattcgcaacgaaaaacgtatgttacaagaagcggttgatgcgctctttgataatggt
cgccgtgccaatgcagtaaaaggtgctaacaaacgtcctttaaaatcactttcagagatt
attaaaggtaaacaaggacgtttccgtcaaaatctactcggaaaaagggttgacttttca
ggtcgttctgttattgttgttggcccaaatttgaaaatggatcagtgcggtcttcctaaa
cagatggcattggagcttttcaaaccacatttgttagcacgtcttgaagaaaaagggtat
gcaacaacggttaagcaagccaaaaaaatgattgacatgaaaaccaatgaagtatgggaa
tgtttagcggaggtggtcaaaggtcatccagttatgttaaaccgtgcaccaacacttcac
aagctttccattcaggcatttcatcctgtcttgattgatggaaaagcgattcgtttgcat
cctcttgtatgttctgcctttaacgcggacttcgatggtgatcaaatggcggttcacgtt
ccactatcacaagaggccattgctgagtgtaaaattttgatgctaagttcgatgaatatc
ttgcttccagcttcaggtaaagcggtaactgttccaacacaagatatggtcttgggtctt
tactatttaacacttgaaaaaccgcatgcaaaaggaagtaataaaatttttgcaaatgtg
gatgaagttcatattgcgattgatgcaggatttttagatattcatgccaaaattaaaaca
cgtattaatgacagagtgctctttacaacagcgggtcgcttgatcttaaaatcaatctta
ccagattttgtacctgaggctcactggaacagagtattgaaaaagaaaaatatcggtgct
ttagttgattttgtttttaaagagggtggtattggtattactgcaggattcttagataat
atcaaaagactcggctttaaatacgcaacagagtcaggtatttcggtttcaattgatgat
atccgtgttcctgaagctaaagtaaaaaaaatcaaagaagcgaagaaaaaagtacgcgag
atccaaaaacagttcagttctggtttattaaccgagcaagaacgttacaacaaaattatt
gatatttggacggatacgaacaatgaagtggcttctgagatgatgaagcttacggaaagt
cataaaggcggctttaactctatttatatgatggcagattctggtgcgcgtggttctgct
gcgcaaattagacagttagcaggtatgaggggacttatggcaaaaccggatggaagtatt
attgaaacaccaattatttcaaacttccgtgaaggtctaaacgttcttgaatactttatt
tcaacgcacggtgcacgtaaaggtcttgcggatacggctcttaaaacagccaacgctggt
tacttgaccagaaagctcattgacgttgcacaaaacgttaaagttacgatggatgattgt
ggtacacacgaaggtgttgagattactgaaatcagcgagagcggtgagcttgtagagtca
ttgtatgagagagcaacaggtcgtgttcttgcagaagatgttatcgatacgatcaccaat
gaagttctttttacagagggaacattgattgatgagaagagcgcacaagcccttaaagag
gcgagcattaagtcagttgttattcgtacaccgattacatgtaaagctaaaaaaggtgtc
tgtgctaaatgttatggtacaaacttggctgagggcacattggttcgtcctggtgaagcg
gttggtattatttcagctcaatctattggtgagcctggtactcagttgaccttgcgtaca
ttccacatcggtggtacagcatcaacagaatcacaagatcgtcaagttattgcccaaaaa
gagggttttatccgttattacaatgtaaaaacttatattactaaagaaggcaagaatatc
gttgctaaccgcagaaatgcagctgttcttcttgtagaaccaaagatcaaagcaccattt
aaaggtacaattgaaattgacacagcacatgaagagacagcgattacgattacaagtggt
agcggtgaaaacattcgctatactctccgtaaaagtgactttgctaaacccaatgagcta
gcgggtgtgagtggtaaaattgagggtaaattttatattccttatgttagcggcgatatg
gttgaagtcaatgagagcatcgtagaggtgattaaagagggttggaatgttccaagtcgt
atcccttatgcgagtgaactcaaagtaaaaaatggtgacccaattatccaaaaaattcat
gcagatgctaaaggtgttgttaaatactataagcttcatggagattatttggatcgtatc
catgatattgaaaaaggtcatgtggttaaagaaaaaggtatttttgcagtggttgcagac
aatgatgatagagaagcaatccgccactatattccacgtgattctatcattgatattaat
gataatagcattgtagaaggaaaaacactccttgcatatccttcaaccagtgagcaaatt
accatcgctgagtgggatccatactctacgccaattattgcagaagatgcgggtacggtt
acatttgaagatattgaaccagggattagtgcgacggaacaatttgatgatatgacaggt
caaagtagacttgtgattaacgaatatcttccaagtggcatgaaaccaaccattattatt
gccaataaaaatggcgagattgttaagtatcaattagagccaaaaacagccatcttcgtt
caaaatggtgtaacggttggtttagcagatttgattggtagaacaccaaaagcgattgca
aaatcaaaagatatcaccggtggtcttccacgtattagtgagctttttgaagcacgtcgt
cctaaaaatgcaaccgtcattgcggaaattgatggaacgattcgttttggtaaaccactt
cgttcaaaagagcgtattattattgaagcagcggatggtacaagtgtagagtatttagtg
gatcgtaatacacaaattcacgttcaaccaggtgaatttgttcatgcaggtgagcgtctt
acggatggtgttatttcaagccatgatattttacgtattatgggtgaaaaagcacttcac
tattatttgatcagtgaaattcaacaagtttaccgtggacaaggtgttgcaattaacgat
aaacacattgaggttatcgtttctcaaatgcttcgccaagtacgtattgttgacagtggc
gatacaaagtttatcatgggtgatttgattagccgtagacgtttccgtgaagagaatgaa
gcggttatgaaaatgggtggagagccagcgattgctgagccaacacttttaggtgttacc
cgtgcagcgatcggtagtgatagtgttatatcagcggcttcattccaagagacaaccaaa
gttctaacggaagcgagtatcgcaggtaagatggatatgctcgaggatcttaaagaaaat
gttatcttaggacgtatgattccagtaggaaccggtctttatcaaaacaaacaatttaat
attgagttgaacccaagcagaggttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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