KEGG   Candidatus Solibacter usitatus: Acid_3463Help
Entry
Acid_3463         CDS       T00412                                 

Definition
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sus  Candidatus Solibacter usitatus
Pathway
sus03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sus00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Acid_3463
Enzymes [BR:sus01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Acid_3463
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Acid_3463
DNA repair and recombination proteins [BR:sus03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Acid_3463
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS FbpA Herpes_UL49_2 zf-TFIIB RNHCP Ribosomal_S13 zf-dskA_traR DnaJ_CXXCXGXG zf-RING_4 TF_Zn_Ribbon Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID: ABJ84436
UniProt: Q021F3
Position
complement(4380008..4380883)
Genome map
AA seq 291 aa AA seqDB search
MPELPDVVVYVEALCARIAGHTLTRVTLRGPFLLRTVTPPIDALYGQRVIDVRRAGKRIA
IGFENGLWLVIHLMIAGRLHWNGKRQPVAAFEFDNGTLTLTEAGTQHRAQIHVLDAAPET
AGLEVLDATLAEFTAALRAENHTLKRSLTDPRLFSGIGNAYSDEILHRARLSPIAMTFKL
TEEEITRLYGATREELELWVKRLREESGDKFPEKVTAFREEMAAHGKYGNPCPRCGGKIQ
RIRYAANETNYCPACQTNGRLLADRALSRLLREDWPRTQEELENFVAKRRV
NT seq 876 nt NT seq  +upstreamnt  +downstreamnt
atgccggaacttcccgatgtggtggtgtatgtagaagcgctctgcgcccggatcgccggc
cacacgctgacccgcgtgacgttgcgcggaccgttcctgctgcgcaccgtgacgccaccg
atcgacgcgctgtatgggcagcgcgtgatcgacgtgcggcgcgcggggaagcggatcgcg
atcgggttcgagaacggcctgtggctggtgatccacctgatgatcgcggggcggctgcac
tggaacggcaagcggcagccggtggcggccttcgaattcgacaacgggacactgactctg
accgaggcggggacacagcatcgcgcgcagattcacgtgctcgacgccgcgcccgagacg
gccggactggaggtgctggacgcaacgctcgcggagttcaccgccgcgctgcgcgccgaa
aatcacacgttgaagcgctcgctcaccgatccgcggctcttcagcggaattggcaatgcc
tattcggacgagattctgcatcgggcgcggctgagtccgatcgcgatgacgttcaagttg
accgaggaagagatcacacggctctatggcgcgacgcgagaggagctggagctatgggtc
aaacggctacgcgaagaatcgggcgataagtttccggagaaggtcacagcctttcgcgag
gagatggcggcgcacgggaagtacggcaatccgtgcccgcgctgcggcggaaagatccag
cgaattcgctacgcggcgaacgagactaactattgcccggcctgccagaccaacggacgg
ttactggctgatcgtgcgctctcgcgcctgctgcgcgaggactggccgcgcacgcaggaa
gagctggaaaacttcgtggccaagcgccgcgtgtga

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