KEGG T05321: SVA

Sulfurifustis variabilis: SVA_2976

Entry

SVA_2976          CDS       T05321

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

sva Sulfurifustis variabilis

Brite

KEGG Orthology (KO) [BR:sva00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sva03016]
    SVA_2976
Enzymes [BR:sva01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     SVA_2976
Transfer RNA biogenesis [BR:sva03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    SVA_2976
Prokaryotic type
   tRNA splicing ligases
    SVA_2976

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

BAU49524

UniProt:

A0A1B4VBC1

Position

3010203..3011633

AA seq 476 aa
MDITLFKRRSDYEWEIEPTGGMRVPGVIYASEALVREMDHKVYEQTVNVAALPGIVQASY
AMPDAHWGYGFPIGGVAAFDPDEGGVVSAGGVGFDISCGVRCLHTGLTADDIRGVQKLLA
DTLYVRIPAGVGSTGRVHLNREEMDAMLTGGAKWAVDRGYGTAADLDRTEEHGQMRDARA
ANVSDRAKKRQQDEMGTLGSGNHYLEVQEVREIYDAKAAAAFGLKPGDAVVSIHCGSRGL
GHQIGTEFLKKMAIAAGTYGIALPDRELACAPIHSPVGEEYLGAMRAGINCALANRQILT
HLVRGVFADVLPQARLPLLYDVSHNTCKVEEHVVDGKPRRLFVHRKGATRAFGPGHPDVP
EPLRAVGQPVLIGGSMGTGSYVLVGTKEAEARSFSSACHGAGRAMSRHQAYRTWKGRQVI
DELAGRGILIRSPSSRGVAEEAPGAYKDVGAVVDAADAAGLARKVARLEPLVCVKG

NT seq 1431 nt +upstreamnt +downstreamnt
atggacatcacccttttcaagcgacgttccgactacgaatgggagatcgaaccgaccggc
ggaatgcgcgtgccgggggtcatttacgcgagcgaggcgctcgtccgcgagatggaccac
aaggtgtacgaacagacggtcaacgtcgccgcgctgcccgggatcgtgcaggcgtcctat
gccatgcccgacgcccactggggctacggctttccgatcggcggcgtcgccgcgttcgat
ccggacgagggcggcgtcgtgtccgccggcggcgtcgggttcgacatctcgtgcggcgtg
cgctgcctgcacaccggtctgaccgcggacgacatccgcggcgtgcagaagctgctggcc
gacaccctgtacgtgcgcatccccgccggcgtgggcagcaccgggcgcgtgcacctcaac
cgcgaggagatggacgccatgctcacgggcggcgcgaagtgggccgtcgaccgcggctac
ggcacggccgcggacctggaccgcaccgaggagcacgggcagatgcgcgacgccagggcg
gccaacgtttccgacagggcgaagaagcgccagcaggacgagatgggcacgctcgggagc
gggaaccattacctcgaggtgcaggaggtcagagagatctatgacgcgaaggccgcggcg
gccttcgggctgaaacccggcgacgcggtcgtgagcatccactgcggctcgcgcgggctc
ggccaccagatcggcaccgagttcctgaagaagatggcgatcgccgccggaacgtacggc
attgcgctcccggaccgggagctcgcctgtgcgccgatccattcgccggtcggcgaggag
tatctcggcgcgatgcgcgcgggcatcaactgcgcgctcgccaaccgccagattctcacg
cacctcgtgcgcggggtgttcgcggacgtgctgccgcaggcgcgcctgccgctcctctac
gacgtctcgcacaacacgtgcaaggtcgaggagcacgtggtcgacgggaagccgcgccgg
ctgttcgtgcatcgcaagggcgccacccgcgccttcggcccggggcacccggacgtgccc
gagccgctgcgcgcggtcggccagcccgtgctgatcggcggctcgatgggcaccggatcc
tacgtgctcgtcggcacgaaggaggccgaggcgcgctcgttcagctccgcctgccacggc
gccgggcgcgccatgagccggcatcaggcctatcgcacttggaaggggcgccaggtgatc
gacgagctcgcgggccgcggcattctcatccgcagcccctcctcccgtggcgtcgccgag
gaggcgccgggtgcgtacaaggacgtcggcgcggtcgtcgatgccgccgacgccgccggc
ctcgcccgcaaggtcgcgcgtctcgagccgctggtctgcgtgaagggatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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