KEGG   Shewanella violacea: SVI_0277
Entry
SVI_0277          CDS       T01206                                 
Symbol
priA
Name
(GenBank) primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
svo  Shewanella violacea
Pathway
svo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:svo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SVI_0277 (priA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:svo03400]
    SVI_0277 (priA)
Enzymes [BR:svo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SVI_0277 (priA)
DNA repair and recombination proteins [BR:svo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     SVI_0277 (priA)
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD ResIII Helicase_C PriA-like_WH PriA_CRR AAA_30 TrwB_AAD_bind AAA_19 AAA_22 DUF5816 zinc-ribbons_6
Other DBs
NCBI-ProteinID: BAJ00248
UniProt: D4ZEL8
Position
complement(334339..336534)
AA seq 731 aa
MPLFVEVALPVPMRQTFSYSVPESVTSVPAQGMRVKVPFGRQQLIGLVIGTSDTCNLAPN
QIKSIIELLDDEPLLPDSLYKLTVWAARYYFCSLGQMLSQALPVALRKGAEVTADTTIFW
SLTTSGNAASLDTLKRAPAQKKVIEALLKTEMTQEELTSLALSKPAMKALQDKGWIAKHE
RTNKIDLSWRDNLELGEEPLTLNPEQAVAVATLNQQSGYHCTLLEGITGSGKTEVYLALL
ESVLKQGKQALILVPEIGLTPQTISRFKSRFKVKVAVIHSGLTDNQRLTAWRQAKTGEAA
IIIGTRSALFTPMAYPGTIILDEEHDSSFKQQEGVGYHARDLAVMRGHLEKIPVLLGTAT
PSLESLQNALSGRYKHLELGQRAGNAEKVRQGIIDISNQPLKTGMSHALLNEIRIHLDAG
NQVLLFLNRRGFSPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNHYAIPRQCHN
CGSTMLMGQGVGTEQLAEALEKEFPKYPVVRIDRDTTSRKGALEGHLNAIHKGEYKILVG
TQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGRARKPGTVLMQT
HQANNAILRELMHKGYGEFARAQLNERKQALLPPAWHMLLIRAEAHLAIDADNFLSQVAQ
FLPQNEECEVIGPMPAPMDKKAGKYRRHLIFQTKSRNLLQQAFEHALPQIEALPLAKRCR
WSLDRDPQDLL
NT seq 2196 nt   +upstreamnt  +downstreamnt
atgcccctgtttgttgaggttgccctacccgttcctatgcgacaaaccttcagttatagc
gtacctgaatccgtcacatcagtgcctgcacagggtatgagagtcaaagttcccttcggt
cggcagcaattaataggtctggttattggaacttccgatacatgtaacttagcacctaat
caaataaaatctatcattgaactattagatgacgagcctttactacctgattctttatat
aaactcacagtatgggcagctagatattatttctgcagtttaggccaaatgctgtctcag
gcccttccagtcgcactgcgcaaaggtgccgaagtcactgccgacaccacgattttttgg
tcattgaccacctcaggaaatgcagcatcattagacacgctaaaacgggctccggcacag
aaaaaggtaatagaagcgctactcaaaaccgaaatgacccaagaagagctcaccagctta
gccttgagtaagccggcaatgaaggccttacaagataaaggctggatagctaaacatgag
cgcactaacaagatagatctcagttggcgagataatcttgagctaggcgaagaaccatta
acgctcaaccccgagcaggcagtggccgtagcaactctcaatcagcaatctggctaccac
tgcaccttgctcgagggcatcacaggctcaggtaaaaccgaggtctacctcgccttactc
gaatctgtacttaagcaaggcaagcaggcactaattttagttccagagataggcctgacc
ccgcaaaccatcagtcgattcaagagccgcttcaaggttaaggtcgcggttattcactcg
ggattaaccgacaaccaaaggttaacggcatggcgtcaagccaaaacaggcgaagccgcc
atcatcataggcacacgctcggcgctcttcaccccgatggcttatccggggacaataatt
ttagacgaggagcacgattcaagctttaaacaacaggaaggtgtcggctatcatgctcgt
gacctagcagtcatgcgcggtcatctcgagaaaattccggtactgctcggcaccgcaact
ccatcattggagagcctgcaaaatgcactcagtggacgctacaagcaccttgaattaggc
caaagagcgggcaatgccgagaaagtccgtcagggcattatcgatattagtaaccagcct
ctaaaaaccggtatgtctcacgccctactcaacgagatacggatccatctggatgcgggt
aaccaggtactcctgttcctcaaccgtagagggttttcacccgccttgctatgccatgaa
tgtggccacctccacgaatgcgatcgctgtgacgccttctttaccgtgcatcaatccctg
ggagagatacgttgtcaccactgtggcaaccattacgcaattccacgtcagtgccataac
tgtggcagcaccatgttgatgggccaaggcgttggtacagagcagctcgccgaggcatta
gaaaaagagttccctaaataccctgtagttcgcatcgatcgcgatacaaccagcagaaag
ggcgcactggaaggtcatctcaatgccatccataagggggagtataagatactagtgggc
actcagatgttagctaagggccaccacttccccgatgtcaccttagtaggtttactggat
gttgacggtgccctattcagtgccgacttcagagcgccggaacgttttgggcaactttat
acccaagtttcaggacgagcgggacgagccagaaaaccaggcacagtgctgatgcagacg
catcaagccaataacgccatcttgcgtgagctaatgcataaaggttatggcgagtttgcc
agagcacagctcaatgaacgtaaacaagcactattaccaccagcctggcatatgctgttg
atacgcgccgaagcccacctggccatagatgccgataactttctttctcaagtcgctcaa
tttctgcctcaaaacgaagagtgcgaagtcataggccccatgccagcccctatggacaaa
aaagcaggtaaatatcgcaggcatctgatttttcaaaccaaatcaagaaatctgctgcaa
caggcattcgaacatgccttgcctcaaattgaagctcttcccctagctaaacgctgtcgc
tggagcttagacagagatccacaagatctgctgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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